Resource

Id Histone_ChIP-seq/ENCSR000DQUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000DQU [biosample_summary="Homo sapiens GM06990" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR000DQU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002783/
  • biosample_summary: Homo sapiens GM06990
  • date_created: 2014-02-12T23:06:47.497359+00:00
  • date_released: 2011-02-11
  • doi: 10.17989/ENCSR000DQU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Replicate 2,1 of this experiment was previously attributed to biosample ENCBS057ENC and replicate 1,1 of this experiment was previously attributed to biosample ENCBS057ENC but they have since been corrected to the current biosamples. Please note that the biosample term has remain unchanged.
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000DQU float

Histone_ChIP-seq_ENCSR000DQU

Histone_ChIP-seq ENCSR000DQU [biosample_summary="Homo sapiens GM06990" and target="H3K27me3"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR000DQU [2.36, 8.74]
n
3,378,766
mean
4.04
sd
0.699

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 33787660.11% 18005
chr1 381662 0.15% 2019
chr2 248562 0.10% 1355
chr3 204177 0.10% 1102
chr4 95107 0.05% 513
chr5 179415 0.10% 959
chr6 160623 0.09% 874
chr7 146035 0.09% 783
chr8 120873 0.08% 661
chr9 170867 0.12% 907
chr10 213586 0.16% 1116
chr11 283148 0.21% 1516
chr12 170358 0.13% 866
chr13 56699 0.05% 311
chr14 91623 0.09% 492
chr15 148082 0.15% 766
chr16 104476 0.12% 551
chr17 197190 0.24% 1023
chr18 73132 0.09% 409
chr19 69333 0.12% 365
chr20 132506 0.21% 712
chr21 31331 0.07% 164
chr22 72730 0.14% 375
chrX 27251 0.02% 166
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 18005 125 1187 187.66 166
global segment-length histogram

Files

Filename Size md5
ENCFF053LMS.bed.gz 296.12 KB 8c9cb939845362d29828f61917e7bc2a
ENCFF053LMS.tabix.bed.gz 168.94 KB ef6631d0bbf6f18cb53c05ecb88ed822
ENCFF053LMS.tabix.bed.gz.tbi 103.42 KB 8b1c57aa0ba40579772398876a36c14f
genomic_resource.yaml 2.68 KB f5745dba0c0e3f280842fecc0f341f9b
statistics/