Resource

Id Histone_ChIP-seq/ENCSR000DQTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000DQT [biosample_summary="Homo sapiens GM06990" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR000DQT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002783/
  • biosample_summary: Homo sapiens GM06990
  • date_created: 2014-02-12T23:06:49.720560+00:00
  • date_released: 2011-02-11
  • doi: 10.17989/ENCSR000DQT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Replicate 1,1 of this experiment was previously attributed to biosample ENCBS057ENC and replicate 2,1 of this experiment was previously attributed to biosample ENCBS057ENC but they have since been corrected to the current biosamples. Please note that the biosample term has remain unchanged.
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000DQT float

Histone_ChIP-seq_ENCSR000DQT

Histone_ChIP-seq ENCSR000DQT [biosample_summary="Homo sapiens GM06990" and target="H3K36me3"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR000DQT [2.02, 12.5]
n
33,040,646
mean
4.84
sd
1.33

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 330406461.03% 104606
chr1 3032095 1.22% 9866
chr2 2004708 0.83% 6920
chr3 1775048 0.90% 5832
chr4 929757 0.49% 3113
chr5 1428878 0.79% 4746
chr6 1284620 0.75% 4250
chr7 1553636 0.98% 5020
chr8 977624 0.67% 3296
chr9 1658118 1.20% 5031
chr10 1285680 0.96% 4331
chr11 1774330 1.31% 5444
chr12 1804837 1.35% 5713
chr13 482161 0.42% 1738
chr14 1007010 0.94% 3348
chr15 1174721 1.15% 3780
chr16 2119248 2.35% 6334
chr17 2331554 2.80% 6984
chr18 371183 0.46% 1390
chr19 2717985 4.64% 7473
chr20 1270115 1.97% 3894
chr21 428830 0.92% 1294
chr22 1331902 2.62% 3755
chrX 296606 0.19% 1054
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 104606 115 4392 315.86 246
global segment-length histogram

Files

Filename Size md5
ENCFF884ZOW.bed.gz 1.78 MB b730f9e5d29094ccf305d8988ba6996d
ENCFF884ZOW.tabix.bed.gz 972.82 KB 62ce617add66c185f646af1e53a42446
ENCFF884ZOW.tabix.bed.gz.tbi 160.57 KB 5de6abd6f3a01f9f39c1cedc86e09538
genomic_resource.yaml 2.92 KB 64e9093ae1f7dee1e1fc3731316fa5cd
statistics/