Resource
| Id | Histone_ChIP-seq/ENCSR000DQF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DQF [biosample_summary="Homo sapiens BJ" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN678HZZ|/analyses/ENCAN678HZZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF067IGK|/files/ENCFF067IGK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12388174 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF316ULC|/files/ENCFF316ULC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12503646 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DQF | float |
Histone_ChIP-seq_ENCSR000DQF |
Histone_ChIP-seq ENCSR000DQF [biosample_summary="Homo sapiens BJ" and target="H3K36me3"]
|
 |
[1.88, 14.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 35995333 | 1.12% | 122244 |
| chr1 | 3296904 | 1.32% | 11473 |
| chr1_KI270711v1_random | 279 | 0.66% | 1 |
| chr2 | 2279088 | 0.94% | 8519 |
| chr3 | 1920436 | 0.97% | 6693 |
| chr4 | 1099164 | 0.58% | 4130 |
| chr5 | 1497199 | 0.82% | 5424 |
| chr6 | 1379199 | 0.81% | 5073 |
| chr7 | 1672424 | 1.05% | 5718 |
| chr8 | 1143838 | 0.79% | 4106 |
| chr9 | 1893172 | 1.37% | 6039 |
| chr10 | 1497897 | 1.12% | 5442 |
| chr11 | 2031662 | 1.50% | 6607 |
| chr12 | 2033129 | 1.53% | 6756 |
| chr13 | 588629 | 0.51% | 2251 |
| chr14 | 1075761 | 1.00% | 3833 |
| chr15 | 1217530 | 1.19% | 4238 |
| chr16 | 2056854 | 2.28% | 6572 |
| chr17 | 2379829 | 2.86% | 7636 |
| chr18 | 491054 | 0.61% | 1928 |
| chr19 | 2989364 | 5.10% | 8737 |
| chr20 | 1179675 | 1.83% | 3867 |
| chr21 | 477187 | 1.02% | 1508 |
| chr22 | 1406207 | 2.77% | 4148 |
| chrUn_GL000219v1 | 183 | 0.10% | 1 |
| chrUn_KI270466v1 | 385 | 31.22% | 2 |
| chrUn_KI270467v1 | 570 | 14.54% | 3 |
| chrX | 374963 | 0.24% | 1473 |
| chrY | 12751 | 0.02% | 66 |
| 3338 contigs with no values (128850524 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 122244 | 120 | 6736 | 294.45 | 218 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF433AOE.bed.gz | 2.18 MB | 10a50efa096a62ed3b360629040ced87 |
| ENCFF433AOE.tabix.bed.gz | 1.12 MB | f93f29df502a4e2825dc27893d70fc48 |
| ENCFF433AOE.tabix.bed.gz.tbi | 185.32 KB | e40ec099682c5ed7c0805dd2e22a6691 |
| genomic_resource.yaml | 2.36 KB | 43f01735599cb8d159314202ebd9870a |
| statistics/ |