Resource
| Id | Histone_ChIP-seq/ENCSR000DQB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DQB [biosample_summary="Homo sapiens BE2C" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN944HIR|/analyses/ENCAN944HIR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF944HIX|/files/ENCFF944HIX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18522304 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF257FKY|/files/ENCFF257FKY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18102397 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DQB | float |
Histone_ChIP-seq_ENCSR000DQB |
Histone_ChIP-seq ENCSR000DQB [biosample_summary="Homo sapiens BE2C" and target="H3K4me3"]
|
 |
[1.42, 116] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 41295006 | 1.28% | 36746 |
| chr1 | 3781564 | 1.52% | 3354 |
| chr1_KI270712v1_random | 185 | 0.11% | 1 |
| chr1_KI270713v1_random | 395 | 0.97% | 1 |
| chr2 | 2778431 | 1.15% | 2526 |
| chr3 | 2329070 | 1.17% | 2064 |
| chr4 | 1977893 | 1.04% | 1665 |
| chr5 | 2220640 | 1.22% | 1876 |
| chr6 | 2524394 | 1.48% | 2055 |
| chr7 | 2021952 | 1.27% | 1881 |
| chr8 | 1751915 | 1.21% | 1545 |
| chr9 | 1706484 | 1.23% | 1563 |
| chr10 | 1801047 | 1.35% | 1641 |
| chr11 | 2072125 | 1.53% | 1883 |
| chr12 | 2168484 | 1.63% | 1799 |
| chr13 | 983063 | 0.86% | 892 |
| chr14 | 1398890 | 1.31% | 1181 |
| chr14_GL000194v1_random | 336 | 0.18% | 1 |
| chr15 | 1399195 | 1.37% | 1233 |
| chr16 | 1591991 | 1.76% | 1443 |
| chr17 | 2211314 | 2.66% | 2027 |
| chr17_GL000205v2_random | 2630 | 1.42% | 2 |
| chr18 | 617878 | 0.77% | 617 |
| chr19 | 2354381 | 4.02% | 2153 |
| chr20 | 1096295 | 1.70% | 1041 |
| chr21 | 407365 | 0.87% | 387 |
| chr22 | 893529 | 1.76% | 837 |
| chrUn_GL000219v1 | 3978 | 2.22% | 4 |
| chrUn_GL000220v1 | 191 | 0.12% | 1 |
| chrX | 1199391 | 0.77% | 1073 |
| 3337 contigs with no values (185369652 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 36746 | 185 | 15946 | 1123.8 | 750 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF089ITH.bed.gz | 932.42 KB | a935d5c57067e837c8fae5a9a9ab03aa |
| ENCFF089ITH.tabix.bed.gz | 410.55 KB | 7be12b6f0beb0897fca8a311e382a45e |
| ENCFF089ITH.tabix.bed.gz.tbi | 196.62 KB | 734d1dc1c2fcfccbb623120f3b830f19 |
| genomic_resource.yaml | 2.55 KB | 333108a0e619df4f8d1f37b26c03eca1 |
| statistics/ |