Resource
| Id | Histone_ChIP-seq/ENCSR000DPJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DPJ [biosample_summary="Homo sapiens AG04450" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN793UXD|/analyses/ENCAN793UXD/} has in progress subobject document {fbb309e6-a468-4d81-9372-979a08765a95|/documents/fbb309e6-a468-4d81-9372-979a08765a95/} audit_internal_action: Released analysis {ENCAN793UXD|/analyses/ENCAN793UXD/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF013HQR|/files/ENCFF013HQR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 19469939 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed unfiltered alignments file {ENCFF205NOY|/files/ENCFF205NOY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 24214785 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DPJ | float |
Histone_ChIP-seq_ENCSR000DPJ |
Histone_ChIP-seq ENCSR000DPJ [biosample_summary="Homo sapiens AG04450" and target="H3K9me3"]
|
 |
[1.99, 130] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 85087186 | 2.64% | 140197 |
| chr1 | 4721102 | 1.90% | 7394 |
| chr2 | 5838083 | 2.41% | 10579 |
| chr3 | 2967270 | 1.50% | 6016 |
| chr4 | 3742599 | 1.97% | 7223 |
| chr5 | 5046127 | 2.78% | 8697 |
| chr6 | 3940301 | 2.31% | 6763 |
| chr7 | 7288984 | 4.57% | 11342 |
| chr8 | 5522533 | 3.81% | 8416 |
| chr9 | 2711424 | 1.96% | 4844 |
| chr10 | 5862718 | 4.38% | 8958 |
| chr11 | 2898005 | 2.15% | 4731 |
| chr12 | 4539640 | 3.41% | 6971 |
| chr13 | 2298651 | 2.01% | 4013 |
| chr14 | 3121359 | 2.92% | 5192 |
| chr15 | 1937715 | 1.90% | 3240 |
| chr16 | 3669348 | 4.06% | 6402 |
| chr17 | 2234056 | 2.68% | 3809 |
| chr18 | 2586123 | 3.22% | 4506 |
| chr19 | 6154303 | 10.50% | 9007 |
| chr20 | 1791144 | 2.78% | 3087 |
| chr21 | 1734047 | 3.71% | 3088 |
| chr22 | 2578969 | 5.07% | 2886 |
| chrX | 1594599 | 1.02% | 2567 |
| chrY | 308086 | 0.54% | 466 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 140197 | 193 | 96771 | 606.91 | 440 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF839BCO.bed.gz | 2.52 MB | b1b3bf629ce3c057a0e24bd36708e2e0 |
| ENCFF839BCO.tabix.bed.gz | 1.28 MB | 10987c746ab2f986bde4a503a264ef28 |
| ENCFF839BCO.tabix.bed.gz.tbi | 353.77 KB | 56064f4f20e2677a7e8d564bc6ba1da9 |
| genomic_resource.yaml | 2.62 KB | 2bed4ee8c870599af8eb8eb117efbb9b |
| statistics/ |