Resource

Id Histone_ChIP-seq/ENCSR000ASCcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000ASC [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H2AFZ"]
Description
Labels
  • accession: ENCSR000ASC
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002618/
  • biosample_summary: Homo sapiens endothelial cell of umbilical vein newborn
  • date_created: 2013-11-07T22:16:18.057853+00:00
  • date_released: 2012-03-06
  • doi: 10.17989/ENCSR000ASC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary: newborn
  • status: released
  • submitter_comment: As of August 2022, the donors associated with the biosamples in this dataset were changed from ENCDO551FXN to ENCDO466MPW and ENCDO560UMK. See PMID:32728101.
  • target: H2AFZ

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000ASC float

Histone_ChIP-seq_ENCSR000ASC
Histone_ChIP-seq ENCSR000ASC [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H2AFZ"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR000ASC [1.7, 28.4]
n
38,522,464
mean
6.77
sd
3.33

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 385224641.20% 80405
chr1 3677786 1.48% 7453
chr2 3044518 1.26% 6241
chr3 2457383 1.24% 5256
chr4 2128573 1.12% 4689
chr5 2141389 1.18% 4618
chr6 2490810 1.46% 5157
chr7 2005875 1.26% 4355
chr8 1651986 1.14% 3430
chr9 1570749 1.13% 3176
chr10 1703852 1.27% 3479
chr11 1837020 1.36% 3810
chr12 1986877 1.49% 4300
chr13 1143968 1.00% 2531
chr14 1299801 1.21% 2639
chr15 1281009 1.26% 2547
chr16 1109149 1.23% 2254
chr17 1671631 2.01% 3400
chr18 855746 1.06% 1856
chr19 1481151 2.53% 2911
chr20 918374 1.43% 1909
chr21 458911 0.98% 1010
chr22 638443 1.26% 1271
chrX 929975 0.60% 2049
chrY 37488 0.07% 64
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 80405 155 5348 479.11 361
global segment-length histogram

Files

Filename Size md5
ENCFF029OVQ.bed.gz 1.76 MB b70695a9e0eddbc94dd66ab5bb70bd8a
ENCFF029OVQ.tabix.bed.gz 846.51 KB 593e4f3591eefeff7ae08d36fd585ca9
ENCFF029OVQ.tabix.bed.gz.tbi 303.56 KB 10b7c00b6d5fb8b203b79c3c6d59fa34
genomic_resource.yaml 2.11 KB 67995ffaad647732808d0ab8aee6f757
statistics/