Resource
| Id | Histone_ChIP-seq/ENCSR000ASB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ASB [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (50 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN414TFA|/analyses/ENCAN414TFA/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF270RRN|/files/ENCFF270RRN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19335846 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF767IAW|/files/ENCFF767IAW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 23310692 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ASB | float |
Histone_ChIP-seq_ENCSR000ASB |
Histone_ChIP-seq ENCSR000ASB [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K79me2"]
|
 |
[1.63, 52] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 153337102 | 4.77% | 159841 |
| chr1 | 14351627 | 5.76% | 15105 |
| chr2 | 12233262 | 5.05% | 12124 |
| chr3 | 10776988 | 5.43% | 10969 |
| chr4 | 7237004 | 3.80% | 8126 |
| chr5 | 8108546 | 4.47% | 8349 |
| chr6 | 8281369 | 4.85% | 9054 |
| chr7 | 7978563 | 5.01% | 8559 |
| chr8 | 6674107 | 4.60% | 6759 |
| chr9 | 6482078 | 4.68% | 6768 |
| chr9_KI270718v1_random | 611 | 1.61% | 1 |
| chr10 | 7606140 | 5.68% | 8164 |
| chr11 | 7365356 | 5.45% | 7403 |
| chr12 | 8399172 | 6.30% | 8919 |
| chr13 | 3591625 | 3.14% | 3847 |
| chr14 | 5216531 | 4.87% | 5525 |
| chr14_GL000194v1_random | 247 | 0.13% | 1 |
| chr15 | 5532218 | 5.42% | 5797 |
| chr16 | 5687558 | 6.30% | 5693 |
| chr17 | 7218059 | 8.67% | 7478 |
| chr17_GL000205v2_random | 461 | 0.25% | 1 |
| chr18 | 3288396 | 4.09% | 3738 |
| chr19 | 5254565 | 8.96% | 5267 |
| chr20 | 3891725 | 6.04% | 3639 |
| chr21 | 1713367 | 3.67% | 1586 |
| chr22 | 3538108 | 6.96% | 3417 |
| chrUn_GL000195v1 | 1011 | 0.55% | 2 |
| chrUn_GL000219v1 | 702 | 0.39% | 3 |
| chrX | 2907706 | 1.86% | 3547 |
| 3338 contigs with no values (185527292 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 159841 | 150 | 25603 | 959.31 | 543 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF910ZUQ.bed.gz | 3.66 MB | 0060517b08b83a1f51f8da7bd77ca1fd |
| ENCFF910ZUQ.tabix.bed.gz | 1.62 MB | 639331eca7a3e1af79e52df39ecf0e85 |
| ENCFF910ZUQ.tabix.bed.gz.tbi | 144.07 KB | be4ea398265095c41048f16aa687b76a |
| genomic_resource.yaml | 2.49 KB | d21c98df21529a4d3872f49a149c300c |
| statistics/ |