Resource
| Id | Histone_ChIP-seq/ENCSR000ARV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ARV [biosample_summary="Homo sapiens fibroblast of dermis" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN568JMQ|/analyses/ENCAN568JMQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN568JMQ|/analyses/ENCAN568JMQ/} has in progress subobject document {fc80c893-49b6-4ed6-9b8f-ca031b560083|/documents/fc80c893-49b6-4ed6-9b8f-ca031b560083/} audit_not_compliant: Processed alignments file {ENCFF364ALT|/files/ENCFF364ALT/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 8057288 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF358WYW|/files/ENCFF358WYW/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 38105430 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ARV | float |
Histone_ChIP-seq_ENCSR000ARV |
Histone_ChIP-seq ENCSR000ARV [biosample_summary="Homo sapiens fibroblast of dermis" and target="H3K4me1"]
|
 |
[1.71, 30.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 133726699 | 4.16% | 177077 |
| chr1 | 12675562 | 5.09% | 16227 |
| chr2 | 12124508 | 5.01% | 15655 |
| chr3 | 9470367 | 4.78% | 12701 |
| chr4 | 6255344 | 3.29% | 8771 |
| chr5 | 8161456 | 4.50% | 10666 |
| chr6 | 8030054 | 4.70% | 11062 |
| chr7 | 6456091 | 4.05% | 8822 |
| chr8 | 6662180 | 4.59% | 8804 |
| chr9 | 6211497 | 4.49% | 7888 |
| chr10 | 7116418 | 5.32% | 9136 |
| chr11 | 7203559 | 5.33% | 8930 |
| chr12 | 6736730 | 5.05% | 8991 |
| chr13 | 3399493 | 2.97% | 4714 |
| chr14 | 3842935 | 3.59% | 5094 |
| chr15 | 4995983 | 4.90% | 6359 |
| chr16 | 3763451 | 4.17% | 5125 |
| chr17 | 5531830 | 6.64% | 7193 |
| chr18 | 3049207 | 3.79% | 4095 |
| chr19 | 2886216 | 4.92% | 4121 |
| chr20 | 3291418 | 5.11% | 4351 |
| chr21 | 1562706 | 3.35% | 2089 |
| chr22 | 2351895 | 4.63% | 3001 |
| chrX | 1947799 | 1.25% | 3282 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 177077 | 143 | 12752 | 755.19 | 556 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF468SLZ.bed.gz | 4.16 MB | 06aaae2b20057ab4c547bcd2bb4dc839 |
| ENCFF468SLZ.tabix.bed.gz | 1.82 MB | 19cfd6e7581546c858337ba4ab53940f |
| ENCFF468SLZ.tabix.bed.gz.tbi | 362.54 KB | 7f51231a2fe90ffc36645ecc4aa7ae64 |
| genomic_resource.yaml | 2.73 KB | 13818298cab9e6210c5ee806083ed1a2 |
| statistics/ |