Resource
| Id | Histone_ChIP-seq/ENCSR000ARG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ARG [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (50 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN495TVJ|/analyses/ENCAN495TVJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF749MVD|/files/ENCFF749MVD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19419087 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed unfiltered alignments file {ENCFF111NYT|/files/ENCFF111NYT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12682819 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ARG | float |
Histone_ChIP-seq_ENCSR000ARG |
Histone_ChIP-seq ENCSR000ARG [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K9me3"]
|
 |
[2.07, 19] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 48266301 | 1.50% | 117344 |
| chr1 | 1649083 | 0.66% | 3996 |
| chr1_KI270709v1_random | 2619 | 3.92% | 5 |
| chr1_KI270712v1_random | 646 | 0.37% | 2 |
| chr2 | 3685103 | 1.52% | 9445 |
| chr2_KI270716v1_random | 4460 | 2.90% | 10 |
| chr3 | 1315195 | 0.66% | 3531 |
| chr4 | 1494915 | 0.79% | 3951 |
| chr4_GL000008v2_random | 4371 | 2.08% | 1 |
| chr5 | 2401720 | 1.32% | 6024 |
| chr5_GL000208v1_random | 3482 | 3.76% | 10 |
| chr6 | 1731442 | 1.01% | 4448 |
| chr7 | 3210359 | 2.01% | 7933 |
| chr8 | 3099075 | 2.14% | 7554 |
| chr9 | 1097172 | 0.79% | 2639 |
| chr9_KI270719v1_random | 1582 | 0.89% | 5 |
| chr9_KI270720v1_random | 979 | 2.51% | 2 |
| chr10 | 2897695 | 2.17% | 6961 |
| chr11 | 1064875 | 0.79% | 2814 |
| chr12 | 1917803 | 1.44% | 4658 |
| chr13 | 1636857 | 1.43% | 4023 |
| chr14 | 2412459 | 2.25% | 6216 |
| chr14_GL000194v1_random | 299 | 0.16% | 1 |
| chr14_GL000225v1_random | 77590 | 36.74% | 107 |
| chr14_KI270722v1_random | 15265 | 7.87% | 27 |
| chr14_KI270723v1_random | 1751 | 4.59% | 5 |
| chr14_KI270725v1_random | 200 | 0.12% | 1 |
| chr14_KI270726v1_random | 577 | 1.32% | 2 |
| chr15 | 2049388 | 2.01% | 4478 |
| chr16 | 2298259 | 2.54% | 5645 |
| chr17 | 1121286 | 1.35% | 2678 |
| chr17_GL000205v2_random | 35278 | 19.01% | 47 |
| chr17_KI270729v1_random | 55052 | 19.60% | 86 |
| chr17_KI270730v1_random | 11649 | 10.35% | 21 |
| chr18 | 1651175 | 2.05% | 4028 |
| chr19 | 3405050 | 5.81% | 7002 |
| chr20 | 1002973 | 1.56% | 2360 |
| chr21 | 2098177 | 4.49% | 4907 |
| chr22 | 1729311 | 3.40% | 3494 |
| chr22_KI270732v1_random | 771 | 1.86% | 2 |
| chr22_KI270735v1_random | 3172 | 7.41% | 6 |
| chr22_KI270736v1_random | 63959 | 35.16% | 107 |
| chr22_KI270737v1_random | 225 | 0.22% | 1 |
| chr22_KI270738v1_random | 17618 | 17.73% | 38 |
| chrUn_GL000214v1 | 628 | 0.46% | 2 |
| chrUn_GL000216v2 | 42319 | 23.96% | 59 |
| chrUn_GL000219v1 | 3713 | 2.07% | 4 |
| chrUn_GL000220v1 | 235 | 0.15% | 1 |
| chrUn_GL000224v1 | 12476 | 6.94% | 25 |
| chrUn_KI270435v1 | 2453 | 2.64% | 6 |
| chrUn_KI270438v1 | 20955 | 18.63% | 49 |
| chrUn_KI270442v1 | 94449 | 24.09% | 112 |
| chrUn_KI270448v1 | 1008 | 12.61% | 3 |
| chrUn_KI270465v1 | 316 | 17.81% | 1 |
| chrUn_KI270468v1 | 1114 | 27.47% | 2 |
| chrUn_KI270507v1 | 162 | 3.03% | 1 |
| chrUn_KI270509v1 | 612 | 26.40% | 1 |
| chrUn_KI270510v1 | 402 | 16.65% | 1 |
| chrUn_KI270511v1 | 2082 | 25.62% | 6 |
| chrUn_KI270512v1 | 1254 | 5.53% | 1 |
| chrUn_KI270515v1 | 1638 | 25.75% | 3 |
| chrUn_KI270516v1 | 325 | 25.00% | 1 |
| chrUn_KI270517v1 | 1074 | 33.02% | 3 |
| chrUn_KI270519v1 | 6411 | 4.64% | 14 |
| chrUn_KI270522v1 | 233 | 4.11% | 1 |
| chrUn_KI270538v1 | 10153 | 11.12% | 26 |
| chrUn_KI270584v1 | 1003 | 22.22% | 1 |
| chrUn_KI270587v1 | 1382 | 46.55% | 2 |
| chrUn_KI270588v1 | 185 | 3.00% | 1 |
| chrUn_KI270589v1 | 3095 | 6.96% | 4 |
| chrUn_KI270590v1 | 1473 | 31.44% | 2 |
| chrUn_KI270591v1 | 791 | 13.65% | 2 |
| chrUn_KI270744v1 | 5475 | 3.25% | 11 |
| chrUn_KI270746v1 | 2707 | 4.07% | 9 |
| chrUn_KI270750v1 | 9287 | 6.24% | 24 |
| chrUn_KI270751v1 | 2153 | 1.43% | 5 |
| chrUn_KI270754v1 | 565 | 1.41% | 2 |
| chrUn_KI270756v1 | 5857 | 7.36% | 10 |
| chrUn_KI270757v1 | 5287 | 7.42% | 9 |
| chrX | 2728050 | 1.75% | 7627 |
| chrY | 24062 | 0.04% | 42 |
| 3286 contigs with no values (123734775 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 117344 | 155 | 15554 | 411.32 | 341 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF037JZB.bed.gz | 2.02 MB | 57beacd2b7ee76ffe385d6c5f9769265 |
| ENCFF037JZB.tabix.bed.gz | 1.05 MB | 180be12cea0f0b1398109b3f22e77fea |
| ENCFF037JZB.tabix.bed.gz.tbi | 246.33 KB | 789eb26271665e2ccc8fd3acbb178575 |
| genomic_resource.yaml | 2.5 KB | feb477b4d909993cc07dc739decce545 |
| statistics/ |