Resource
| Id | Histone_ChIP-seq/ENCSR000AQX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AQX [biosample_summary="Homo sapiens DND-41" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN920SWL|/analyses/ENCAN920SWL/} has in progress subobject document {31de74b1-923d-43b4-a80b-a6c52cb99464|/documents/31de74b1-923d-43b4-a80b-a6c52cb99464/} audit_internal_action: Released analysis {ENCAN920SWL|/analyses/ENCAN920SWL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF746BJD|/files/ENCFF746BJD/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 28736920 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF973TDF|/files/ENCFF973TDF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 17441573 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AQX | float |
Histone_ChIP-seq_ENCSR000AQX |
Histone_ChIP-seq ENCSR000AQX [biosample_summary="Homo sapiens DND-41" and target="H3K36me3"]
|
 |
[1.65, 34.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 182824465 | 5.68% | 162646 |
| chr1 | 17985817 | 7.22% | 15686 |
| chr2 | 14931699 | 6.17% | 13658 |
| chr3 | 12313129 | 6.21% | 10911 |
| chr4 | 7388584 | 3.88% | 7023 |
| chr5 | 9545349 | 5.26% | 8446 |
| chr6 | 8234162 | 4.82% | 7771 |
| chr7 | 8970319 | 5.63% | 8201 |
| chr8 | 6392004 | 4.40% | 6212 |
| chr9 | 6153626 | 4.45% | 5933 |
| chr10 | 7810768 | 5.84% | 7103 |
| chr11 | 8492717 | 6.29% | 7109 |
| chr12 | 9911763 | 7.44% | 8635 |
| chr13 | 4510553 | 3.94% | 4317 |
| chr14 | 6718154 | 6.28% | 6237 |
| chr15 | 5641426 | 5.53% | 5768 |
| chr16 | 7360137 | 8.15% | 6034 |
| chr17 | 10163346 | 12.21% | 8341 |
| chr18 | 3324144 | 4.14% | 3175 |
| chr19 | 9568395 | 16.32% | 7232 |
| chr20 | 5894046 | 9.15% | 4334 |
| chr21 | 2334269 | 5.00% | 1799 |
| chr22 | 4768953 | 9.38% | 3696 |
| chrX | 4075269 | 2.61% | 4623 |
| chrY | 335836 | 0.59% | 402 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 162646 | 178 | 39933 | 1124.06 | 685 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF723IHN.bed.gz | 3.63 MB | f134b4b4990fe908f1fabec941b68004 |
| ENCFF723IHN.tabix.bed.gz | 1.63 MB | 5c1f877d17a09a8543a5f783674591be |
| ENCFF723IHN.tabix.bed.gz.tbi | 153.56 KB | 9a2abd590d8a83104b63eb1ecd95446e |
| genomic_resource.yaml | 2.61 KB | 2b8ff6da01507195dec4347f52b903c0 |
| statistics/ |