Resource

Id Histone_ChIP-seq/ENCSR000AQWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000AQW [biosample_summary="Homo sapiens DND-41" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR000AQW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007074/
  • biosample_summary: Homo sapiens DND-41
  • date_created: 2013-11-07T22:16:01.680585+00:00
  • date_released: 2012-03-06
  • doi: 10.17989/ENCSR000AQW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000AQW float

Histone_ChIP-seq_ENCSR000AQW
Histone_ChIP-seq ENCSR000AQW [biosample_summary="Homo sapiens DND-41" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR000AQW [1.62, 57]
n
63,149,632
mean
12.1
sd
8.43

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 631496321.96% 69769
chr1 6033383 2.42% 6419
chr1_KI270713v1_random 166 0.41% 1
chr2 5124144 2.12% 5736
chr3 4548582 2.29% 4990
chr4 2376608 1.25% 2679
chr5 3579325 1.97% 3920
chr5_GL000208v1_random 2309 2.49% 4
chr6 3586855 2.10% 3905
chr7 3214148 2.02% 3675
chr8 2327685 1.60% 2609
chr9 1950115 1.41% 2166
chr10 2776095 2.07% 2984
chr11 3004555 2.22% 3148
chr12 2943517 2.21% 3317
chr13 1648480 1.44% 1777
chr14 2509700 2.34% 2721
chr15 1771871 1.74% 2030
chr16 2266607 2.51% 2643
chr17 3295407 3.96% 3579
chr17_GL000205v2_random 1453 0.78% 3
chr18 1277178 1.59% 1405
chr19 2399646 4.09% 2921
chr20 1807664 2.81% 2132
chr21 1035832 2.22% 1136
chr22 1492657 2.94% 1696
chr22_KI270733v1_random 296 0.16% 1
chr22_KI270738v1_random 228 0.23% 1
chrUn_GL000195v1 287 0.16% 1
chrUn_GL000219v1 2095 1.17% 3
chrUn_GL000220v1 742 0.46% 3
chrUn_KI270519v1 707 0.51% 2
chrUn_KI270538v1 7324 8.02% 17
chrX 1978788 1.27% 1970
chrY 185183 0.32% 175
3332 contigs with no values (127725582 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69769 160 32713 905.12 516
global segment-length histogram

Files

Filename Size md5
ENCFF813BXP.bed.gz 1.71 MB f161d05a62da82c89739a1393ad8c04e
ENCFF813BXP.tabix.bed.gz 759.33 KB bd771fca39a78814d42d991e4b16b55c
ENCFF813BXP.tabix.bed.gz.tbi 182.71 KB 29c329b1eb7037493982a392fc80d757
genomic_resource.yaml 1.36 KB 6b60f35f0e2126b30a379942599e3197
statistics/