Resource

Id Histone_ChIP-seq/ENCSR000AQNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000AQN [biosample_summary="Homo sapiens HeLa-S3" and target="H2AFZ"]
Description
Labels
  • accession: ENCSR000AQN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002791/
  • biosample_summary: Homo sapiens HeLa-S3
  • date_created: 2013-11-07T22:16:02.471603+00:00
  • date_released: 2012-03-06
  • doi: 10.17989/ENCSR000AQN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H2AFZ

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000AQN float

Histone_ChIP-seq_ENCSR000AQN

Histone_ChIP-seq ENCSR000AQN [biosample_summary="Homo sapiens HeLa-S3" and target="H2AFZ"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR000AQN [1.65, 36]
n
41,137,640
mean
7.19
sd
4.14

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 411376401.28% 72743
chr1 4259198 1.71% 7363
chr1_KI270712v1_random 426 0.24% 1
chr2 2808620 1.16% 4984
chr3 2586147 1.30% 4569
chr4 1240466 0.65% 2283
chr5 2537460 1.40% 4714
chr6 2427970 1.42% 4325
chr7 1945240 1.22% 3564
chr8 1785209 1.23% 3244
chr9 2024831 1.46% 3526
chr9_KI270720v1_random 294 0.75% 1
chr10 1831473 1.37% 3273
chr11 2201802 1.63% 3723
chr12 2247919 1.69% 3943
chr13 805753 0.70% 1532
chr14 1377915 1.29% 2356
chr14_GL000009v2_random 191 0.09% 1
chr15 1683776 1.65% 2873
chr16 1433388 1.59% 2438
chr17 2054704 2.47% 3449
chr17_GL000205v2_random 914 0.49% 2
chr18 857847 1.07% 1645
chr19 1611380 2.75% 2805
chr20 1191423 1.85% 2147
chr21 459818 0.98% 836
chr22 589708 1.16% 1050
chrUn_GL000195v1 336 0.18% 1
chrUn_GL000220v1 271 0.17% 1
chrUn_KI270442v1 592 0.15% 2
chrX 1172569 0.75% 2092
3336 contigs with no values (184965348 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 72743 160 4548 565.52 444
global segment-length histogram

Files

Filename Size md5
ENCFF470FSZ.bed.gz 1.6 MB be1573363b1967882482a96c5f40f54f
ENCFF470FSZ.tabix.bed.gz 751.34 KB 6698d222e9dd31d6c1921358f5ba332d
ENCFF470FSZ.tabix.bed.gz.tbi 299.5 KB 5ed140269613597a1ce2434f104ba2ff
genomic_resource.yaml 1.36 KB d520e346a2cb9213642aec795ff62c15
statistics/