Resource
| Id | Histone_ChIP-seq/ENCSR000AQM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AQM [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN170MFO|/analyses/ENCAN170MFO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF955SRK|/files/ENCFF955SRK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19583730 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF683PZS|/files/ENCFF683PZS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 41756797 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AQM | float |
Histone_ChIP-seq_ENCSR000AQM |
Histone_ChIP-seq ENCSR000AQM [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K9me3"]
|
 |
[1.66, 13.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 15888925 | 0.49% | 42950 |
| chr1 | 1106324 | 0.44% | 3049 |
| chr1_KI270713v1_random | 155 | 0.38% | 1 |
| chr2 | 1288488 | 0.53% | 3576 |
| chr2_KI270716v1_random | 481 | 0.31% | 2 |
| chr3 | 882277 | 0.44% | 2463 |
| chr4 | 811856 | 0.43% | 2278 |
| chr4_GL000008v2_random | 4121 | 1.97% | 4 |
| chr5 | 1035191 | 0.57% | 2862 |
| chr6 | 828324 | 0.48% | 2341 |
| chr7 | 845551 | 0.53% | 2351 |
| chr8 | 776429 | 0.53% | 2230 |
| chr9 | 665232 | 0.48% | 1800 |
| chr9_KI270720v1_random | 193 | 0.49% | 1 |
| chr10 | 846091 | 0.63% | 2356 |
| chr11 | 650353 | 0.48% | 1767 |
| chr12 | 784912 | 0.59% | 2078 |
| chr13 | 458385 | 0.40% | 1404 |
| chr14 | 397795 | 0.37% | 1140 |
| chr14_GL000225v1_random | 5537 | 2.62% | 18 |
| chr14_KI270722v1_random | 1936 | 1.00% | 6 |
| chr15 | 512173 | 0.50% | 1378 |
| chr16 | 492568 | 0.55% | 1306 |
| chr17 | 424884 | 0.51% | 1130 |
| chr17_GL000205v2_random | 6920 | 3.73% | 16 |
| chr17_KI270729v1_random | 11574 | 4.12% | 26 |
| chr17_KI270730v1_random | 2137 | 1.90% | 7 |
| chr18 | 395800 | 0.49% | 1163 |
| chr19 | 1348224 | 2.30% | 2788 |
| chr20 | 456417 | 0.71% | 1234 |
| chr21 | 342297 | 0.73% | 842 |
| chr22 | 319856 | 0.63% | 848 |
| chr22_KI270733v1_random | 1298 | 0.72% | 5 |
| chr22_KI270735v1_random | 1134 | 2.65% | 2 |
| chr22_KI270736v1_random | 8523 | 4.69% | 14 |
| chr22_KI270738v1_random | 582 | 0.59% | 2 |
| chrUn_GL000214v1 | 312 | 0.23% | 1 |
| chrUn_GL000216v2 | 16017 | 9.07% | 30 |
| chrUn_GL000219v1 | 2763 | 1.54% | 7 |
| chrUn_GL000224v1 | 2866 | 1.59% | 7 |
| chrUn_KI270435v1 | 405 | 0.44% | 1 |
| chrUn_KI270438v1 | 7518 | 6.68% | 19 |
| chrUn_KI270442v1 | 37396 | 9.54% | 76 |
| chrUn_KI270465v1 | 264 | 14.88% | 1 |
| chrUn_KI270468v1 | 273 | 6.73% | 1 |
| chrUn_KI270516v1 | 270 | 20.77% | 1 |
| chrUn_KI270519v1 | 968 | 0.70% | 3 |
| chrUn_KI270538v1 | 220 | 0.24% | 1 |
| chrUn_KI270589v1 | 2305 | 5.18% | 4 |
| chrUn_KI270591v1 | 292 | 5.04% | 1 |
| chrUn_KI270744v1 | 621 | 0.37% | 3 |
| chrUn_KI270746v1 | 378 | 0.57% | 2 |
| chrUn_KI270751v1 | 937 | 0.62% | 1 |
| chrUn_KI270756v1 | 312 | 0.39% | 1 |
| chrUn_KI270757v1 | 577 | 0.81% | 2 |
| chrX | 86272 | 0.06% | 260 |
| chrY | 13941 | 0.02% | 40 |
| 3310 contigs with no values (125051559 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 42950 | 145 | 7324 | 369.94 | 305 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF008PVB.bed.gz | 830.41 KB | 4f1d1579a91de3a37bc185baf27d7160 |
| ENCFF008PVB.tabix.bed.gz | 419.11 KB | 518265a50212a433d71191422a45f59e |
| ENCFF008PVB.tabix.bed.gz.tbi | 222.34 KB | 893cf6da579ac144e66c77736802fd48 |
| genomic_resource.yaml | 2.5 KB | 7e6b32fed087a95b91c1569b94186a79 |
| statistics/ |