Resource
| Id | Histone_ChIP-seq/ENCSR000APW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000APW [biosample_summary="Homo sapiens HeLa-S3" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN319FKG|/analyses/ENCAN319FKG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF617YCQ|/files/ENCFF617YCQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15505318 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF235FMM|/files/ENCFF235FMM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18772478 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000APW | float |
Histone_ChIP-seq_ENCSR000APW |
Histone_ChIP-seq ENCSR000APW [biosample_summary="Homo sapiens HeLa-S3" and target="H3K4me1"]
|
 |
[1.73, 36.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 112203211 | 3.49% | 111319 |
| chr1 | 11481585 | 4.61% | 10842 |
| chr2 | 8157167 | 3.37% | 8269 |
| chr3 | 7315062 | 3.69% | 7186 |
| chr4 | 4011681 | 2.11% | 4667 |
| chr5 | 6519576 | 3.59% | 6243 |
| chr6 | 6697647 | 3.92% | 6780 |
| chr7 | 5267015 | 3.31% | 5434 |
| chr8 | 5153062 | 3.55% | 4867 |
| chr9 | 5255701 | 3.80% | 4891 |
| chr10 | 5578057 | 4.17% | 5373 |
| chr11 | 5965429 | 4.42% | 5716 |
| chr12 | 5975497 | 4.48% | 5843 |
| chr13 | 2254311 | 1.97% | 2395 |
| chr14 | 3743102 | 3.50% | 3580 |
| chr15 | 4336922 | 4.25% | 3937 |
| chr16 | 3632322 | 4.02% | 3777 |
| chr17 | 5386966 | 6.47% | 5288 |
| chr18 | 2668955 | 3.32% | 2598 |
| chr19 | 3234830 | 5.52% | 4048 |
| chr20 | 3195285 | 4.96% | 3034 |
| chr21 | 1391423 | 2.98% | 1356 |
| chr22 | 1866728 | 3.67% | 1988 |
| chrUn_GL000195v1 | 358 | 0.20% | 1 |
| chrX | 3114530 | 2.00% | 3206 |
| 3342 contigs with no values (186121604 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 111319 | 200 | 19831 | 1007.94 | 729 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF360CQR.bed.gz | 2.49 MB | 102441e09b1b270ceffcfea1f9103951 |
| ENCFF360CQR.tabix.bed.gz | 1.14 MB | 042af90ba1d5e452f089fafee2352299 |
| ENCFF360CQR.tabix.bed.gz.tbi | 299.32 KB | 4baab26679bf7636d5c65aec6821ef0c |
| genomic_resource.yaml | 2.37 KB | 513dce86770ca9e3b46b6599127a222d |
| statistics/ |