Resource
| Id | Histone_ChIP-seq/ENCSR000APR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000APR [biosample_summary="Homo sapiens fibroblast of dermis NONE and female adult" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN172DGC|/analyses/ENCAN172DGC/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF664FYA|/files/ENCFF664FYA/} processed by ChIP-seq ENCODE3 hg19 pipeline has 9116188 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000APR | float |
Histone_ChIP-seq_ENCSR000APR |
Histone_ChIP-seq ENCSR000APR [biosample_summary="Homo sapiens fibroblast of dermis NONE and female adult" and target="H3K4me3"]
|
 |
[1.67, 68.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 41180541 | 1.28% | 49578 |
| chr1 | 3980197 | 1.60% | 4695 |
| chr2 | 3048744 | 1.26% | 3660 |
| chr3 | 2547179 | 1.28% | 3025 |
| chr4 | 1871172 | 0.98% | 2202 |
| chr5 | 2151179 | 1.18% | 2559 |
| chr6 | 2612826 | 1.53% | 3020 |
| chr7 | 1986216 | 1.25% | 2456 |
| chr8 | 1668250 | 1.15% | 2096 |
| chr9 | 1688132 | 1.22% | 2072 |
| chr10 | 1878556 | 1.40% | 2369 |
| chr11 | 2157513 | 1.60% | 2494 |
| chr12 | 2290811 | 1.72% | 2678 |
| chr13 | 956875 | 0.84% | 1209 |
| chr14 | 1314536 | 1.23% | 1533 |
| chr15 | 1397676 | 1.37% | 1673 |
| chr16 | 1396041 | 1.55% | 1719 |
| chr17 | 2113060 | 2.54% | 2544 |
| chr18 | 820964 | 1.02% | 1106 |
| chr19 | 2030997 | 3.46% | 2407 |
| chr20 | 965300 | 1.50% | 1185 |
| chr21 | 422969 | 0.91% | 559 |
| chr22 | 790212 | 1.55% | 943 |
| chrX | 1090812 | 0.70% | 1373 |
| chrY | 324 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 49578 | 145 | 12474 | 830.62 | 531 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF811YTI.bed.gz | 1.23 MB | 822e2f42afa58c13f6e1184e43a2c061 |
| ENCFF811YTI.tabix.bed.gz | 543.57 KB | f24ef8e8d0d055bb5ce3992b0a4a4ac1 |
| ENCFF811YTI.tabix.bed.gz.tbi | 217.2 KB | 9799458a23664138a2eceaf0300905a2 |
| genomic_resource.yaml | 1.97 KB | a5b75b8769eb3f3237f887763c531546 |
| statistics/ |