Resource
| Id | Histone_ChIP-seq/ENCSR000APP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000APP [biosample_summary="Homo sapiens fibroblast of dermis" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN643HHT|/analyses/ENCAN643HHT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF008XJN|/files/ENCFF008XJN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8471505 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF267JEF|/files/ENCFF267JEF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 29033687 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000APP | float |
Histone_ChIP-seq_ENCSR000APP |
Histone_ChIP-seq ENCSR000APP [biosample_summary="Homo sapiens fibroblast of dermis" and target="H3K36me3"]
|
 |
[1.59, 12.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 38354834 | 1.19% | 90381 |
| chr1 | 3745468 | 1.50% | 8702 |
| chr2 | 3129401 | 1.29% | 7374 |
| chr3 | 2411566 | 1.22% | 5712 |
| chr4 | 1546498 | 0.81% | 3793 |
| chr5 | 2031369 | 1.12% | 4768 |
| chr6 | 1831620 | 1.07% | 4345 |
| chr7 | 1620697 | 1.02% | 3908 |
| chr8 | 1333832 | 0.92% | 3269 |
| chr9 | 1708228 | 1.23% | 3985 |
| chr10 | 1787411 | 1.34% | 4254 |
| chr11 | 2112801 | 1.56% | 4819 |
| chr12 | 2325319 | 1.74% | 5349 |
| chr13 | 808730 | 0.71% | 2024 |
| chr14 | 1310779 | 1.22% | 3126 |
| chr15 | 1620524 | 1.59% | 3699 |
| chr16 | 1545948 | 1.71% | 3693 |
| chr17 | 2159091 | 2.59% | 4979 |
| chr18 | 676008 | 0.84% | 1651 |
| chr19 | 1869613 | 3.19% | 4301 |
| chr20 | 1031245 | 1.60% | 2443 |
| chr21 | 491486 | 1.05% | 1078 |
| chr22 | 907935 | 1.79% | 2092 |
| chrUn_GL000219v1 | 130 | 0.07% | 1 |
| chrUn_KI270752v1 | 373 | 1.34% | 2 |
| chrX | 348762 | 0.22% | 1014 |
| 3341 contigs with no values (186097557 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 90381 | 130 | 10729 | 424.37 | 345 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF806VCD.bed.gz | 1.75 MB | 5e163c75c097cf0a63c5bedbb61946ed |
| ENCFF806VCD.tabix.bed.gz | 881.2 KB | 38583c67f74860b0d93e2ba969099179 |
| ENCFF806VCD.tabix.bed.gz.tbi | 172.04 KB | 4e93904eb3e2850a23785428ff498c58 |
| genomic_resource.yaml | 2.42 KB | b5a6da25d20f3fb1f1ed39fd5fa2a513 |
| statistics/ |