Resource
| Id | Histone_ChIP-seq/ENCSR000APD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000APD [biosample_summary="Homo sapiens K562" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN863WND|/analyses/ENCAN863WND/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF171KRI|/files/ENCFF171KRI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11500791 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF294MOL|/files/ENCFF294MOL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19017147 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000APD | float |
Histone_ChIP-seq_ENCSR000APD |
Histone_ChIP-seq ENCSR000APD [biosample_summary="Homo sapiens K562" and target="H3K79me2"]
|
 |
[1.83, 53.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 61424971 | 1.91% | 91115 |
| chr1 | 6508331 | 2.61% | 9451 |
| chr2 | 4593337 | 1.90% | 6517 |
| chr3 | 3910097 | 1.97% | 5645 |
| chr4 | 2613385 | 1.37% | 3913 |
| chr5 | 3016196 | 1.66% | 4334 |
| chr6 | 3744839 | 2.19% | 5102 |
| chr7 | 3565714 | 2.24% | 5299 |
| chr8 | 2717674 | 1.87% | 3946 |
| chr9 | 2325341 | 1.68% | 3646 |
| chr10 | 2909213 | 2.17% | 4312 |
| chr11 | 2704968 | 2.00% | 4117 |
| chr12 | 3200237 | 2.40% | 4622 |
| chr13 | 1095269 | 0.96% | 1886 |
| chr14 | 1712530 | 1.60% | 2784 |
| chr15 | 2100812 | 2.06% | 3368 |
| chr16 | 2596550 | 2.87% | 3825 |
| chr17 | 2978435 | 3.58% | 4966 |
| chr18 | 891597 | 1.11% | 1335 |
| chr19 | 2829089 | 4.83% | 4054 |
| chr20 | 1686515 | 2.62% | 2391 |
| chr21 | 810517 | 1.74% | 981 |
| chr22 | 1259726 | 2.48% | 2025 |
| chrX | 1654599 | 1.06% | 2596 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 91115 | 125 | 26394 | 674.15 | 336 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF769WZF.bed.gz | 1.88 MB | 3cf355403986c7945b5d2f0cdb299d4c |
| ENCFF769WZF.tabix.bed.gz | 914.29 KB | da684ae2202829165a5bf41979519ae9 |
| ENCFF769WZF.tabix.bed.gz.tbi | 122.35 KB | 69c5370232f6b40144e1f9d70cedfdfc |
| genomic_resource.yaml | 2.37 KB | f76b84b98ce3daf9d0541df7225b32ad |
| statistics/ |