Resource
| Id | Histone_ChIP-seq/ENCSR000APC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000APC [biosample_summary="Homo sapiens K562" and target="H2AFZ"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN658CBU|/analyses/ENCAN658CBU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF472XNE|/files/ENCFF472XNE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17479171 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2AFZ-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF407AUC|/files/ENCFF407AUC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14744074 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2AFZ-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000APC | float |
Histone_ChIP-seq_ENCSR000APC |
Histone_ChIP-seq ENCSR000APC [biosample_summary="Homo sapiens K562" and target="H2AFZ"]
|
 |
[1.77, 39.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 50025464 | 1.55% | 100908 |
| chr1 | 5640581 | 2.27% | 10944 |
| chr1_KI270713v1_random | 1134 | 2.78% | 5 |
| chr1_KI270714v1_random | 504 | 1.21% | 2 |
| chr2 | 4074673 | 1.68% | 8331 |
| chr3 | 3378914 | 1.70% | 6859 |
| chr4 | 2237826 | 1.18% | 4610 |
| chr5 | 2412915 | 1.33% | 4716 |
| chr6 | 4006427 | 2.35% | 7597 |
| chr7 | 2745987 | 1.72% | 5563 |
| chr8 | 2002119 | 1.38% | 4136 |
| chr9 | 1621514 | 1.17% | 3376 |
| chr10 | 2244500 | 1.68% | 4487 |
| chr11 | 2630179 | 1.95% | 5315 |
| chr12 | 2657906 | 1.99% | 5386 |
| chr13 | 795113 | 0.70% | 1722 |
| chr14 | 1337468 | 1.25% | 2728 |
| chr14_GL000009v2_random | 278 | 0.14% | 1 |
| chr15 | 1680055 | 1.65% | 3237 |
| chr16 | 1425632 | 1.58% | 2871 |
| chr17 | 2173369 | 2.61% | 4478 |
| chr17_GL000205v2_random | 3204 | 1.73% | 5 |
| chr18 | 917472 | 1.14% | 1930 |
| chr19 | 2077649 | 3.54% | 4294 |
| chr20 | 1175845 | 1.82% | 2424 |
| chr21 | 644186 | 1.38% | 1319 |
| chr22 | 811575 | 1.60% | 1739 |
| chrUn_GL000195v1 | 336 | 0.18% | 1 |
| chrUn_GL000219v1 | 1630 | 0.91% | 4 |
| chrUn_KI270442v1 | 396 | 0.10% | 2 |
| chrUn_KI270744v1 | 393 | 0.23% | 2 |
| chrX | 1325684 | 0.85% | 2824 |
| 3335 contigs with no values (184912111 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 100908 | 145 | 5852 | 495.75 | 363 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF921IKK.bed.gz | 2.18 MB | 70e47dae6135e4c5d480e7a4236bd7ab |
| ENCFF921IKK.tabix.bed.gz | 1.02 MB | 58dc5918f5f8fe4b8beac224b543ff96 |
| ENCFF921IKK.tabix.bed.gz.tbi | 272.73 KB | adbce3511b0882e9ab83d8a12791595f |
| genomic_resource.yaml | 2.34 KB | d062412a3fb3e12d051f79b21ddea225 |
| statistics/ |