Resource
| Id | Histone_ChIP-seq/ENCSR000APB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000APB [biosample_summary="Homo sapiens HeLa-S3" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN975HAM|/analyses/ENCAN975HAM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF833PJA|/files/ENCFF833PJA/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19778259 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF576BBK|/files/ENCFF576BBK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 25277637 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000APB | float |
Histone_ChIP-seq_ENCSR000APB |
Histone_ChIP-seq ENCSR000APB [biosample_summary="Homo sapiens HeLa-S3" and target="H3K27me3"]
|
 |
[1.56, 13.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 72288956 | 2.25% | 95540 |
| chr1 | 7503798 | 3.01% | 9727 |
| chr2 | 2895134 | 1.20% | 4164 |
| chr3 | 2881568 | 1.45% | 4099 |
| chr4 | 349026 | 0.18% | 610 |
| chr5 | 4976465 | 2.74% | 6209 |
| chr6 | 2667358 | 1.56% | 3951 |
| chr7 | 4549856 | 2.86% | 6193 |
| chr8 | 4651471 | 3.20% | 6125 |
| chr9 | 3584686 | 2.59% | 4425 |
| chr10 | 4418073 | 3.30% | 5883 |
| chr11 | 3811128 | 2.82% | 4883 |
| chr12 | 4386049 | 3.29% | 5795 |
| chr13 | 1883221 | 1.65% | 2766 |
| chr14 | 2415902 | 2.26% | 3341 |
| chr15 | 3702091 | 3.63% | 4630 |
| chr16 | 2970108 | 3.29% | 4254 |
| chr17 | 3462491 | 4.16% | 4236 |
| chr18 | 2107492 | 2.62% | 3043 |
| chr19 | 1532825 | 2.61% | 2042 |
| chr20 | 4513175 | 7.00% | 4643 |
| chr21 | 1041598 | 2.23% | 1356 |
| chr22 | 696789 | 1.37% | 1089 |
| chrX | 1288652 | 0.83% | 2076 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 95540 | 215 | 10031 | 756.64 | 594 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF252BLX.bed.gz | 1.87 MB | ff760e45506c3df3aae3e0b29a8c1dfc |
| ENCFF252BLX.tabix.bed.gz | 938.12 KB | 69fae145c97e195b33bb7c6ad8a8e971 |
| ENCFF252BLX.tabix.bed.gz.tbi | 167.72 KB | 8755f5afa4b0fb146522e5637fa28dc8 |
| genomic_resource.yaml | 2.37 KB | ae0c092c749a9c1f75684c932846116e |
| statistics/ |