Resource
| Id | Histone_ChIP-seq/ENCSR000AOW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AOW [biosample_summary="Homo sapiens GM12878" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN147LRT|/analyses/ENCAN147LRT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF676NDU|/files/ENCFF676NDU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12288864 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF231YZJ|/files/ENCFF231YZJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11504622 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AOW | float |
Histone_ChIP-seq_ENCSR000AOW |
Histone_ChIP-seq ENCSR000AOW [biosample_summary="Homo sapiens GM12878" and target="H3K79me2"]
|
 |
[1.69, 34.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 67510809 | 2.10% | 108308 |
| chr1 | 6069130 | 2.44% | 9814 |
| chr2 | 5319136 | 2.20% | 8193 |
| chr3 | 4707032 | 2.37% | 7528 |
| chr4 | 2886855 | 1.52% | 4687 |
| chr5 | 3868105 | 2.13% | 5966 |
| chr6 | 4115950 | 2.41% | 6278 |
| chr7 | 3354321 | 2.11% | 5831 |
| chr8 | 2686991 | 1.85% | 4180 |
| chr9 | 2757022 | 1.99% | 4419 |
| chr10 | 3182413 | 2.38% | 5146 |
| chr11 | 3156670 | 2.34% | 5067 |
| chr12 | 3708898 | 2.78% | 5811 |
| chr13 | 1538181 | 1.34% | 2381 |
| chr14 | 2572015 | 2.40% | 4136 |
| chr15 | 2584678 | 2.53% | 4194 |
| chr16 | 2502002 | 2.77% | 4079 |
| chr17 | 3255873 | 3.91% | 5414 |
| chr17_GL000205v2_random | 1342 | 0.72% | 5 |
| chr18 | 1329068 | 1.65% | 2113 |
| chr19 | 2640020 | 4.50% | 4268 |
| chr20 | 1816677 | 2.82% | 2760 |
| chr21 | 645969 | 1.38% | 935 |
| chr22 | 1495605 | 2.94% | 2631 |
| chrEBV | 268 | 0.16% | 1 |
| chrUn_GL000195v1 | 217 | 0.12% | 1 |
| chrUn_GL000219v1 | 814 | 0.45% | 4 |
| chrX | 1315557 | 0.84% | 2466 |
| 3339 contigs with no values (185584992 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 108308 | 110 | 23144 | 623.32 | 334 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF213GPU.bed.gz | 2.09 MB | 21dfe27a8b79eedb10e820fe88e23539 |
| ENCFF213GPU.tabix.bed.gz | 1.04 MB | aab46818db30035bc186082d2b9eed72 |
| ENCFF213GPU.tabix.bed.gz.tbi | 124.25 KB | 119612a894c76afff8348ec4a9b2e456 |
| genomic_resource.yaml | 2.38 KB | 418c668d43719127920e860894b55327 |
| statistics/ |