Resource
| Id | Histone_ChIP-seq/ENCSR000AOV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AOV [biosample_summary="Homo sapiens GM12878" and target="H2AFZ"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN344AQP|/analyses/ENCAN344AQP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN344AQP|/analyses/ENCAN344AQP/} has in progress subobject document {344b1cb6-55d5-4c62-afcf-1ed46aa0d3dd|/documents/344b1cb6-55d5-4c62-afcf-1ed46aa0d3dd/} audit_warning: Processed alignments file {ENCFF703AIM|/files/ENCFF703AIM/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 17155564 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2AFZ-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF256UUQ|/files/ENCFF256UUQ/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 12121639 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2AFZ-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AOV | float |
Histone_ChIP-seq_ENCSR000AOV |
Histone_ChIP-seq ENCSR000AOV [biosample_summary="Homo sapiens GM12878" and target="H2AFZ"]
|
 |
[1.93, 37.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 33143991 | 1.03% | 60993 |
| chr1 | 3332800 | 1.34% | 6046 |
| chr2 | 2589341 | 1.07% | 4777 |
| chr3 | 2142225 | 1.08% | 3863 |
| chr4 | 1402880 | 0.74% | 2594 |
| chr5 | 1861531 | 1.03% | 3373 |
| chr6 | 2294559 | 1.34% | 4041 |
| chr7 | 1594325 | 1.00% | 2961 |
| chr8 | 1346399 | 0.93% | 2510 |
| chr9 | 1270945 | 0.92% | 2302 |
| chr10 | 1527850 | 1.14% | 2817 |
| chr11 | 1595377 | 1.18% | 2915 |
| chr12 | 1858169 | 1.39% | 3415 |
| chr13 | 809072 | 0.71% | 1467 |
| chr14 | 1094515 | 1.02% | 1957 |
| chr15 | 1128832 | 1.11% | 2040 |
| chr16 | 1105250 | 1.22% | 2056 |
| chr17 | 1636701 | 1.97% | 3049 |
| chr18 | 620351 | 0.77% | 1203 |
| chr19 | 1480954 | 2.53% | 2740 |
| chr20 | 770205 | 1.20% | 1485 |
| chr21 | 307856 | 0.66% | 593 |
| chr22 | 645674 | 1.27% | 1282 |
| chrX | 728180 | 0.47% | 1507 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 60993 | 148 | 3772 | 543.41 | 412 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF377OJG.bed.gz | 1.26 MB | e037f3bb6dee6aeb2ef035b9eb356bf5 |
| ENCFF377OJG.tabix.bed.gz | 632.31 KB | 8f2eb7fba74379b06a91ccbfb9d8aea8 |
| ENCFF377OJG.tabix.bed.gz.tbi | 241.01 KB | 0988d9fe8d10b3a202b7c11a10a9cb7d |
| genomic_resource.yaml | 2.59 KB | 5d09d236e9ae30a4e6455bdc608b8725 |
| statistics/ |