Resource
| Id | Histone_ChIP-seq/ENCSR000AON |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AON [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN765MKR|/analyses/ENCAN765MKR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN765MKR|/analyses/ENCAN765MKR/} has in progress subobject document {f78ba4c8-08fb-484c-9d4d-3d743b2fec1e|/documents/f78ba4c8-08fb-484c-9d4d-3d743b2fec1e/} audit_not_compliant: Processed alignments file {ENCFF271LVP|/files/ENCFF271LVP/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 24572456 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF389EMI|/files/ENCFF389EMI/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 17394250 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AON | float |
Histone_ChIP-seq_ENCSR000AON |
Histone_ChIP-seq ENCSR000AON [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K79me2"]
|
 |
[1.67, 26.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 114427452 | 3.56% | 155705 |
| chr1 | 10646461 | 4.28% | 14529 |
| chr2 | 9457680 | 3.91% | 12246 |
| chr3 | 7914794 | 3.99% | 10572 |
| chr4 | 5659068 | 2.98% | 7643 |
| chr5 | 6375168 | 3.51% | 8480 |
| chr6 | 6117333 | 3.58% | 8380 |
| chr7 | 5751150 | 3.61% | 7981 |
| chr8 | 4481829 | 3.09% | 6150 |
| chr9 | 4841539 | 3.50% | 6841 |
| chr10 | 6116038 | 4.57% | 8145 |
| chr11 | 5675208 | 4.20% | 7423 |
| chr12 | 5823915 | 4.37% | 7808 |
| chr13 | 3356260 | 2.93% | 4463 |
| chr14 | 3746448 | 3.50% | 5302 |
| chr15 | 4367336 | 4.28% | 5783 |
| chr16 | 4230947 | 4.68% | 5977 |
| chr17 | 4949094 | 5.94% | 7081 |
| chr18 | 2277897 | 2.83% | 3161 |
| chr19 | 3982919 | 6.79% | 5547 |
| chr20 | 2939188 | 4.56% | 3709 |
| chr21 | 1445696 | 3.10% | 1817 |
| chr22 | 2364146 | 4.65% | 3372 |
| chrX | 1765447 | 1.13% | 3063 |
| chrY | 141891 | 0.25% | 232 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 155705 | 115 | 21692 | 734.9 | 435 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF499WLJ.bed.gz | 3.51 MB | 300bf6b9357c0163a57a0caff266d669 |
| ENCFF499WLJ.tabix.bed.gz | 1.55 MB | 4cb3e679a203a34fc56dd3d5044348d4 |
| ENCFF499WLJ.tabix.bed.gz.tbi | 154.89 KB | a1d1616e8925b36f3b4ae35b2f676010 |
| genomic_resource.yaml | 2.74 KB | 2c9e0442de01d42cacdfded2f00cfe76 |
| statistics/ |