Resource
| Id | Histone_ChIP-seq/ENCSR000AOD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AOD [biosample_summary="Homo sapiens HeLa-S3" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN589RWK|/analyses/ENCAN589RWK/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF237RQN|/files/ENCFF237RQN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 26681264 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF156SYA|/files/ENCFF156SYA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 24634239 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AOD | float |
Histone_ChIP-seq_ENCSR000AOD |
Histone_ChIP-seq ENCSR000AOD [biosample_summary="Homo sapiens HeLa-S3" and target="H3K36me3"]
|
 |
[1.61, 11.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 83266234 | 2.59% | 140426 |
| chr1 | 8828573 | 3.55% | 14434 |
| chr2 | 5161528 | 2.13% | 9296 |
| chr3 | 5713107 | 2.88% | 9899 |
| chr4 | 1642350 | 0.86% | 3283 |
| chr5 | 5122093 | 2.82% | 8086 |
| chr6 | 3253699 | 1.90% | 5833 |
| chr7 | 3854300 | 2.42% | 6799 |
| chr8 | 3423736 | 2.36% | 6030 |
| chr9 | 4435349 | 3.20% | 6873 |
| chr10 | 3848628 | 2.88% | 6575 |
| chr11 | 4589025 | 3.40% | 7169 |
| chr12 | 4894476 | 3.67% | 8213 |
| chr13 | 1329501 | 1.16% | 2487 |
| chr14 | 2911990 | 2.72% | 5220 |
| chr15 | 4127354 | 4.05% | 6623 |
| chr16 | 3532015 | 3.91% | 5779 |
| chr17 | 4863729 | 5.84% | 8090 |
| chr17_GL000205v2_random | 289 | 0.16% | 1 |
| chr18 | 1765014 | 2.20% | 3190 |
| chr19 | 2566574 | 4.38% | 4336 |
| chr20 | 2756868 | 4.28% | 4285 |
| chr21 | 1193810 | 2.56% | 2005 |
| chr22 | 931762 | 1.83% | 1686 |
| chrUn_GL000195v1 | 440 | 0.24% | 1 |
| chrX | 2520024 | 1.61% | 4233 |
| 3341 contigs with no values (185936013 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 140426 | 145 | 11014 | 592.95 | 452 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF248WXB.bed.gz | 2.82 MB | 57d7ba8a1e15d490ef7f779527a9f48b |
| ENCFF248WXB.tabix.bed.gz | 1.35 MB | 17fdc2f9a42f48390e13610526d19331 |
| ENCFF248WXB.tabix.bed.gz.tbi | 162.96 KB | b7a1f93bf5c9b1412125ba2810a7a5f7 |
| genomic_resource.yaml | 2.44 KB | 50ab62b0cfcb0143fd8bf42cccbff952 |
| statistics/ |