Resource
| Id | Histone_ChIP-seq/ENCSR000ANP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ANP [biosample_summary="Homo sapiens H1" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN504CRC|/analyses/ENCAN504CRC/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF948TVI|/files/ENCFF948TVI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12210689 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF661NZB|/files/ENCFF661NZB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 13230670 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANP | float |
Histone_ChIP-seq_ENCSR000ANP |
Histone_ChIP-seq ENCSR000ANP [biosample_summary="Homo sapiens H1" and target="H3K27ac"]
|
 |
[1.93, 55.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 19365226 | 0.60% | 34445 |
| chr1 | 1973534 | 0.79% | 3397 |
| chr2 | 1306983 | 0.54% | 2342 |
| chr3 | 1163430 | 0.59% | 2130 |
| chr4 | 787184 | 0.41% | 1413 |
| chr5 | 993481 | 0.55% | 1759 |
| chr6 | 1198608 | 0.70% | 2050 |
| chr7 | 976829 | 0.61% | 1771 |
| chr8 | 724394 | 0.50% | 1370 |
| chr9 | 788255 | 0.57% | 1441 |
| chr10 | 812113 | 0.61% | 1485 |
| chr11 | 1008547 | 0.75% | 1759 |
| chr12 | 1043664 | 0.78% | 1766 |
| chr13 | 412499 | 0.36% | 796 |
| chr14 | 628882 | 0.59% | 1101 |
| chr15 | 579633 | 0.57% | 1026 |
| chr16 | 756071 | 0.84% | 1400 |
| chr17 | 1021072 | 1.23% | 1790 |
| chr18 | 343510 | 0.43% | 636 |
| chr19 | 1140656 | 1.95% | 2003 |
| chr20 | 513010 | 0.80% | 920 |
| chr21 | 184422 | 0.39% | 360 |
| chr22 | 454791 | 0.89% | 815 |
| chrX | 526636 | 0.34% | 876 |
| chrY | 27022 | 0.05% | 39 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 34445 | 175 | 5493 | 562.21 | 435 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF507QTS.bed.gz | 838.01 KB | 13796dc34869e3374f911551fdab8585 |
| ENCFF507QTS.tabix.bed.gz | 374.25 KB | 183eca078d26094419223078a02cc567 |
| ENCFF507QTS.tabix.bed.gz.tbi | 174.07 KB | 43b589a36f62dae923ab8e9981fc58a6 |
| genomic_resource.yaml | 2.34 KB | 24d27ecee9b0e08294e1afe06e7be82e |
| statistics/ |