Resource
| Id | Histone_ChIP-seq/ENCSR000ANK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ANK [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN700IYE|/analyses/ENCAN700IYE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF063EVY|/files/ENCFF063EVY/} processed by ChIP-seq ENCODE3 hg19 pipeline has 7645202 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF743PUV|/files/ENCFF743PUV/} processed by ChIP-seq ENCODE3 hg19 pipeline has 6831613 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANK | float |
Histone_ChIP-seq_ENCSR000ANK |
Histone_ChIP-seq ENCSR000ANK [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K4me3"]
|
 |
[1.87, 115] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 36181619 | 1.12% | 30834 |
| chr1 | 3549525 | 1.43% | 3004 |
| chr2 | 2564342 | 1.06% | 2236 |
| chr3 | 2043677 | 1.03% | 1695 |
| chr4 | 1404531 | 0.74% | 1189 |
| chr5 | 1718606 | 0.95% | 1419 |
| chr6 | 2082417 | 1.22% | 1782 |
| chr7 | 1699137 | 1.07% | 1445 |
| chr8 | 1326453 | 0.91% | 1155 |
| chr9 | 1530812 | 1.11% | 1326 |
| chr10 | 1590228 | 1.19% | 1424 |
| chr11 | 2012795 | 1.49% | 1634 |
| chr12 | 1927811 | 1.45% | 1558 |
| chr13 | 772732 | 0.68% | 716 |
| chr14 | 1163940 | 1.09% | 977 |
| chr15 | 1195080 | 1.17% | 1019 |
| chr16 | 1456078 | 1.61% | 1203 |
| chr17 | 2108312 | 2.53% | 1783 |
| chr18 | 599417 | 0.75% | 542 |
| chr19 | 2218988 | 3.79% | 1897 |
| chr20 | 896013 | 1.39% | 792 |
| chr21 | 388881 | 0.83% | 368 |
| chr22 | 839529 | 1.65% | 736 |
| chrX | 1057874 | 0.68% | 915 |
| chrY | 34441 | 0.06% | 19 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 30834 | 170 | 19231 | 1173.43 | 807 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF520BGG.bed.gz | 814.26 KB | 82bcd41b2b55f3a327dfc0a91a867cfb |
| ENCFF520BGG.tabix.bed.gz | 349.08 KB | 951b27812ec5fe9e752474f5468e1b2c |
| ENCFF520BGG.tabix.bed.gz.tbi | 165.27 KB | 28070c1f6d7d5e703de244f3c8bee219 |
| genomic_resource.yaml | 2.48 KB | 62c1c7a6997ab50f88b1dc0d71eb4820 |
| statistics/ |