Resource
| Id | Histone_ChIP-seq/ENCSR000ANI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ANI [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN179YMN|/analyses/ENCAN179YMN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN179YMN|/analyses/ENCAN179YMN/} has in progress subobject document {eafeeb1d-abcc-43d3-b7f3-632c66116947|/documents/eafeeb1d-abcc-43d3-b7f3-632c66116947/} audit_not_compliant: Processed alignments file {ENCFF699IAQ|/files/ENCFF699IAQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 8180393 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF483ONW|/files/ENCFF483ONW/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 7840402 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANI | float |
Histone_ChIP-seq_ENCSR000ANI |
Histone_ChIP-seq ENCSR000ANI [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K4me1"]
|
 |
[1.87, 19.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 49832154 | 1.55% | 107809 |
| chr1 | 4982308 | 2.00% | 10423 |
| chr2 | 4553860 | 1.88% | 9685 |
| chr3 | 3385322 | 1.71% | 7508 |
| chr4 | 2134678 | 1.12% | 4976 |
| chr5 | 2883367 | 1.59% | 6216 |
| chr6 | 2917773 | 1.71% | 6603 |
| chr7 | 2253641 | 1.41% | 4949 |
| chr8 | 2127099 | 1.47% | 4794 |
| chr9 | 2364410 | 1.71% | 4994 |
| chr10 | 2618888 | 1.96% | 5571 |
| chr11 | 2806208 | 2.08% | 5865 |
| chr12 | 2472489 | 1.86% | 5394 |
| chr13 | 1351498 | 1.18% | 3064 |
| chr14 | 1594384 | 1.49% | 3380 |
| chr15 | 1955483 | 1.92% | 4044 |
| chr16 | 1527158 | 1.69% | 3283 |
| chr17 | 2403733 | 2.89% | 4878 |
| chr18 | 851506 | 1.06% | 2031 |
| chr19 | 1070412 | 1.83% | 2367 |
| chr20 | 1284672 | 1.99% | 2738 |
| chr21 | 722548 | 1.55% | 1499 |
| chr22 | 1096257 | 2.16% | 2226 |
| chrX | 455417 | 0.29% | 1269 |
| chrY | 19043 | 0.03% | 52 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 107809 | 153 | 5849 | 462.23 | 370 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF045PLQ.bed.gz | 2.17 MB | abeda1b134efc2ddc29e0761bc7a1933 |
| ENCFF045PLQ.tabix.bed.gz | 1.04 MB | d01cb1cd8c7df8fc741a5d624acc173a |
| ENCFF045PLQ.tabix.bed.gz.tbi | 308.09 KB | 10c2fc6fcdd2c327db29acd7c5984ed1 |
| genomic_resource.yaml | 2.71 KB | 9229863408d33638d8d61a4e81974c58 |
| statistics/ |