Resource
| Id | Histone_ChIP-seq/ENCSR000ANH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ANH [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN798IEN|/analyses/ENCAN798IEN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF190SSF|/files/ENCFF190SSF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16478940 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF536NDQ|/files/ENCFF536NDQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11921892 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANH | float |
Histone_ChIP-seq_ENCSR000ANH |
Histone_ChIP-seq ENCSR000ANH [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K36me3"]
|
 |
[1.9, 11.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 32981313 | 1.03% | 105678 |
| chr1 | 3391757 | 1.36% | 10680 |
| chr2 | 3050361 | 1.26% | 9653 |
| chr3 | 2275546 | 1.15% | 7343 |
| chr4 | 1619991 | 0.85% | 5231 |
| chr5 | 2056813 | 1.13% | 6429 |
| chr6 | 1703257 | 1.00% | 5550 |
| chr7 | 1495806 | 0.94% | 4799 |
| chr8 | 1135592 | 0.78% | 3838 |
| chr9 | 1343348 | 0.97% | 4402 |
| chr10 | 1507101 | 1.13% | 4874 |
| chr11 | 1632951 | 1.21% | 5150 |
| chr12 | 1889176 | 1.42% | 5942 |
| chr13 | 910619 | 0.80% | 2954 |
| chr14 | 1171343 | 1.09% | 3718 |
| chr15 | 1329984 | 1.30% | 4180 |
| chr16 | 1015749 | 1.12% | 3356 |
| chr17 | 1493852 | 1.79% | 4835 |
| chr18 | 549715 | 0.68% | 1870 |
| chr19 | 1184874 | 2.02% | 3645 |
| chr20 | 788038 | 1.22% | 2520 |
| chr21 | 478790 | 1.03% | 1485 |
| chr22 | 625652 | 1.23% | 1991 |
| chrUn_GL000195v1 | 524 | 0.29% | 2 |
| chrX | 304685 | 0.20% | 1127 |
| chrY | 25789 | 0.05% | 104 |
| 3341 contigs with no values (128894189 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 105678 | 150 | 3136 | 312.09 | 257 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF452DAM.bed.gz | 1.9 MB | 665650f5fe8db5a78733127f72e62695 |
| ENCFF452DAM.tabix.bed.gz | 1011.17 KB | 1056dcb6b995b34f51949e9a77ef5576 |
| ENCFF452DAM.tabix.bed.gz.tbi | 186.68 KB | b0836f54616795771636c36d3677cce2 |
| genomic_resource.yaml | 2.49 KB | c2a3437d338f4872e517c91069467fd4 |
| statistics/ |