Resource
| Id | Histone_ChIP-seq/ENCSR000ANF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ANF [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN271MPX|/analyses/ENCAN271MPX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN271MPX|/analyses/ENCAN271MPX/} has in progress subobject document {d2cad60a-f469-4f49-92a2-c75012d11ca7|/documents/d2cad60a-f469-4f49-92a2-c75012d11ca7/} audit_not_compliant: Processed alignments file {ENCFF577JPO|/files/ENCFF577JPO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 8057667 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF475OCK|/files/ENCFF475OCK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 10266559 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF475OCK|/files/ENCFF475OCK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF475OCK|/files/ENCFF475OCK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.31. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANF | float |
Histone_ChIP-seq_ENCSR000ANF |
Histone_ChIP-seq ENCSR000ANF [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K27ac"]
|
 |
[1.84, 99.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 58660153 | 1.82% | 68002 |
| chr1 | 5499144 | 2.21% | 6436 |
| chr2 | 5130011 | 2.12% | 5855 |
| chr3 | 3995638 | 2.01% | 4539 |
| chr4 | 2802504 | 1.47% | 3246 |
| chr5 | 3418044 | 1.88% | 3824 |
| chr6 | 3669479 | 2.15% | 4169 |
| chr7 | 2834621 | 1.78% | 3327 |
| chr8 | 2492649 | 1.72% | 2898 |
| chr9 | 2564055 | 1.85% | 2992 |
| chr10 | 2928833 | 2.19% | 3269 |
| chr11 | 2973075 | 2.20% | 3366 |
| chr12 | 3012435 | 2.26% | 3408 |
| chr13 | 1646361 | 1.44% | 1879 |
| chr14 | 1900905 | 1.78% | 2111 |
| chr15 | 2056323 | 2.02% | 2399 |
| chr16 | 1732223 | 1.92% | 2197 |
| chr17 | 2462770 | 2.96% | 2995 |
| chr18 | 1081148 | 1.35% | 1267 |
| chr19 | 1570190 | 2.68% | 2052 |
| chr20 | 1320575 | 2.05% | 1582 |
| chr21 | 932386 | 2.00% | 993 |
| chr22 | 1102271 | 2.17% | 1269 |
| chrX | 1451743 | 0.93% | 1833 |
| chrY | 82770 | 0.14% | 96 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 68002 | 180 | 20945 | 862.62 | 569 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF019RMZ.bed.gz | 1.62 MB | 3cfeebf056397ba0bb316fd14ab9c278 |
| ENCFF019RMZ.tabix.bed.gz | 734.59 KB | 975f4f6c854e6758146e775405ed4211 |
| ENCFF019RMZ.tabix.bed.gz.tbi | 248.2 KB | e9aef5df05f538acebc1b6df74fb3cee |
| genomic_resource.yaml | 3.97 KB | 8520002b668f62e7263fc9dea6df6e3f |
| statistics/ |