Resource
| Id | Histone_ChIP-seq/ENCSR000ANC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ANC [biosample_summary="Homo sapiens H1" and target="H3K4me2"] |
| Description |
status: archived biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN890AIH|/analyses/ENCAN890AIH/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF694EXK|/files/ENCFF694EXK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11330199 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF115ZGZ|/files/ENCFF115ZGZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12550300 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANC | float |
Histone_ChIP-seq_ENCSR000ANC |
Histone_ChIP-seq ENCSR000ANC [biosample_summary="Homo sapiens H1" and target="H3K4me2"]
|
 |
[2.19, 45.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 69340066 | 2.16% | 70324 |
| chr1 | 6806994 | 2.73% | 6640 |
| chr1_KI270713v1_random | 4455 | 10.93% | 8 |
| chr1_KI270714v1_random | 295 | 0.71% | 1 |
| chr2 | 4889318 | 2.02% | 5077 |
| chr3 | 3967486 | 2.00% | 4116 |
| chr4 | 2958042 | 1.56% | 3137 |
| chr5 | 3516390 | 1.94% | 3610 |
| chr6 | 4193143 | 2.45% | 4115 |
| chr7 | 3435192 | 2.16% | 3721 |
| chr8 | 2766166 | 1.91% | 2881 |
| chr9 | 2847055 | 2.06% | 2909 |
| chr10 | 3030456 | 2.26% | 3109 |
| chr11 | 3718603 | 2.75% | 3643 |
| chr12 | 3516479 | 2.64% | 3483 |
| chr13 | 1563490 | 1.37% | 1637 |
| chr14 | 2226230 | 2.08% | 2171 |
| chr15 | 2291013 | 2.25% | 2286 |
| chr16 | 2522303 | 2.79% | 2566 |
| chr17 | 3689696 | 4.43% | 3461 |
| chr17_GL000205v2_random | 777 | 0.42% | 2 |
| chr18 | 1364254 | 1.70% | 1492 |
| chr19 | 3694684 | 6.30% | 3523 |
| chr20 | 1909146 | 2.96% | 1939 |
| chr21 | 664568 | 1.42% | 711 |
| chr22 | 1424764 | 2.80% | 1511 |
| chrUn_KI270438v1 | 1724 | 1.53% | 5 |
| chrX | 2264923 | 1.45% | 2498 |
| chrY | 72420 | 0.13% | 72 |
| 3338 contigs with no values (128696527 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 70324 | 170 | 14343 | 986.01 | 664 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF836LZM.bed.gz | 1.78 MB | e9b56f3dfeca3718e33f56eaf04a0212 |
| ENCFF836LZM.tabix.bed.gz | 781.04 KB | fef127ad28e79f829ea3009e043edeb0 |
| ENCFF836LZM.tabix.bed.gz.tbi | 298.07 KB | 91a141c65d5de14f818639b5ff4a9e32 |
| genomic_resource.yaml | 2.34 KB | 2c6c61f27f17c9d6c21f4569f97afb00 |
| statistics/ |