Resource
| Id | Histone_ChIP-seq/ENCSR000ANA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ANA [biosample_summary="Homo sapiens H1" and target="H3K4me1"] |
| Description |
status: archived biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN041PGB|/analyses/ENCAN041PGB/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF111BKP|/files/ENCFF111BKP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 7358637 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF594OXW|/files/ENCFF594OXW/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14570394 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANA | float |
Histone_ChIP-seq_ENCSR000ANA |
Histone_ChIP-seq ENCSR000ANA [biosample_summary="Homo sapiens H1" and target="H3K4me1"]
|
 |
[1.78, 18.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 58312454 | 1.81% | 137165 |
| chr1 | 5954941 | 2.39% | 13157 |
| chr2 | 4315293 | 1.78% | 10548 |
| chr3 | 3577187 | 1.80% | 8741 |
| chr4 | 2274885 | 1.20% | 5835 |
| chr5 | 2986111 | 1.64% | 7216 |
| chr6 | 3216690 | 1.88% | 7815 |
| chr7 | 2930037 | 1.84% | 7102 |
| chr8 | 2497788 | 1.72% | 6035 |
| chr9 | 2656620 | 1.92% | 6195 |
| chr10 | 2925424 | 2.19% | 6886 |
| chr11 | 3395337 | 2.51% | 7634 |
| chr12 | 2740848 | 2.06% | 6385 |
| chr13 | 1364818 | 1.19% | 3526 |
| chr14 | 1857998 | 1.74% | 4274 |
| chr15 | 2097300 | 2.06% | 4678 |
| chr16 | 2216683 | 2.45% | 5032 |
| chr17 | 3131888 | 3.76% | 6595 |
| chr18 | 1266445 | 1.58% | 3178 |
| chr19 | 2006419 | 3.42% | 4570 |
| chr20 | 1724267 | 2.68% | 3875 |
| chr21 | 614818 | 1.32% | 1455 |
| chr22 | 1543581 | 3.04% | 3361 |
| chrX | 993064 | 0.64% | 2984 |
| chrY | 24012 | 0.04% | 88 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 137165 | 135 | 6016 | 425.13 | 343 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF173MJD.bed.gz | 2.86 MB | 00280e083ce4b85ce884ce240c94e3a7 |
| ENCFF173MJD.tabix.bed.gz | 1.35 MB | 7dd0f32040ce68c12949e4ca651c2855 |
| ENCFF173MJD.tabix.bed.gz.tbi | 413.79 KB | 85cfdc236b6883c780d1f80af5b57068 |
| genomic_resource.yaml | 2.35 KB | 5ee68ed91e1ceb94df47b9945a1ca201 |
| statistics/ |