Resource
| Id | Histone_ChIP-seq/ENCSR000AMW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AMW [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (45 years) female child (11 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN761KVA|/analyses/ENCAN761KVA/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF953WAZ|/files/ENCFF953WAZ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 8478028 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF593NSI|/files/ENCFF593NSI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15645753 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AMW | float |
Histone_ChIP-seq_ENCSR000AMW |
Histone_ChIP-seq ENCSR000AMW [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K4me3"]
|
 |
[1.93, 41] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 29409413 | 0.91% | 32238 |
| chr1 | 2894270 | 1.16% | 3153 |
| chr2 | 2039143 | 0.84% | 2171 |
| chr3 | 1749853 | 0.88% | 1830 |
| chr4 | 1247442 | 0.66% | 1261 |
| chr5 | 1487647 | 0.82% | 1514 |
| chr6 | 1809615 | 1.06% | 1948 |
| chr7 | 1411623 | 0.89% | 1553 |
| chr8 | 1123291 | 0.77% | 1245 |
| chr9 | 1198280 | 0.87% | 1319 |
| chr10 | 1241129 | 0.93% | 1334 |
| chr11 | 1617393 | 1.20% | 1726 |
| chr12 | 1626184 | 1.22% | 1737 |
| chr13 | 627008 | 0.55% | 716 |
| chr14 | 943394 | 0.88% | 1011 |
| chr15 | 969329 | 0.95% | 1055 |
| chr16 | 1130379 | 1.25% | 1285 |
| chr17 | 1641202 | 1.97% | 1882 |
| chr18 | 504179 | 0.63% | 567 |
| chr19 | 1719880 | 2.93% | 2039 |
| chr20 | 711721 | 1.10% | 776 |
| chr21 | 278943 | 0.60% | 338 |
| chr22 | 606640 | 1.19% | 714 |
| chrX | 820631 | 0.53% | 1039 |
| chrY | 10237 | 0.02% | 25 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 32238 | 160 | 13720 | 912.26 | 610 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF792NWH.bed.gz | 745.47 KB | eacdfe342357ba46a43016458b81a740 |
| ENCFF792NWH.tabix.bed.gz | 350.95 KB | a0f9cf0c10a450bd9783c654f5c57f81 |
| ENCFF792NWH.tabix.bed.gz.tbi | 149.58 KB | 49d917a17e872cb5cd08d6482bc42918 |
| genomic_resource.yaml | 2.59 KB | 5a865af9ddca12e51e2ea672fed27f69 |
| statistics/ |