type: position_score
table:
  filename: ENCFF928WDI.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR000AMU
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000AMU [TISSUE: Homo sapiens fibroblast of lung female child
    (11 years) and male adult (45 years), TARGET: H3K4me1]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: male adult (45 years) female child (11 years)


    **output\_type**: pseudoreplicated peaks


    **audit\_error**: Processed alignments file {ENCFF088FFQ|/files/ENCFF088FFQ/}
    processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 4430164 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})


    **audit\_internal\_action**: Released analysis {ENCAN573OCO|/analyses/ENCAN573OCO/}
    has in progress subobject document {e25e2309-1110-4f34-b09e-2ee6fea83131|/documents/e25e2309-1110-4f34-b09e-2ee6fea83131/}


    **audit\_internal\_action**: Released analysis {ENCAN573OCO|/analyses/ENCAN573OCO/}
    has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/}


    **audit\_not\_compliant**: Processed alignments file {ENCFF505WNW|/files/ENCFF505WNW/}
    processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 13259702 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000AMU
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female child (11 years) male adult (45 years)
    biosample_summary: Homo sapiens fibroblast of lung female child (11 years) and
      male adult (45 years)
    replication_type: anisogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0002553/
    perturbed: false
    doi: 10.17989/ENCSR000AMU
    date_created: '2013-11-07T22:16:26.360991+00:00'
    date_released: '2011-02-10'
    submitter_comment: ''
    target: H3K4me1