Resource
| Id | Histone_ChIP-seq/ENCSR000AMT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AMT [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (45 years) female child (11 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN169GIE|/analyses/ENCAN169GIE/} has in progress subobject document {d3408fc3-a914-40c3-aa65-df34ca0c3488|/documents/d3408fc3-a914-40c3-aa65-df34ca0c3488/} audit_internal_action: Released analysis {ENCAN169GIE|/analyses/ENCAN169GIE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF569UUF|/files/ENCFF569UUF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 7283646 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF757MMH|/files/ENCFF757MMH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 13570447 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AMT | float |
Histone_ChIP-seq_ENCSR000AMT |
Histone_ChIP-seq ENCSR000AMT [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K36me3"]
|
 |
[2.01, 16.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 23390013 | 0.73% | 76227 |
| chr1 | 2223961 | 0.89% | 7475 |
| chr2 | 1428008 | 0.59% | 5043 |
| chr3 | 1177604 | 0.59% | 4018 |
| chr4 | 705056 | 0.37% | 2485 |
| chr5 | 1046410 | 0.58% | 3548 |
| chr6 | 883047 | 0.52% | 3079 |
| chr7 | 1114987 | 0.70% | 3664 |
| chr8 | 719670 | 0.50% | 2447 |
| chr9 | 1137573 | 0.82% | 3523 |
| chr10 | 928368 | 0.69% | 3251 |
| chr11 | 1365512 | 1.01% | 4321 |
| chr12 | 1300286 | 0.98% | 4238 |
| chr13 | 375276 | 0.33% | 1388 |
| chr14 | 732748 | 0.68% | 2465 |
| chr15 | 758962 | 0.74% | 2636 |
| chr16 | 1408424 | 1.56% | 4277 |
| chr17 | 1638826 | 1.97% | 5113 |
| chr18 | 265400 | 0.33% | 988 |
| chr19 | 2039805 | 3.48% | 5725 |
| chr20 | 770284 | 1.20% | 2437 |
| chr21 | 326696 | 0.70% | 972 |
| chr22 | 866439 | 1.70% | 2512 |
| chrX | 176301 | 0.11% | 620 |
| chrY | 370 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 76227 | 138 | 5272 | 306.85 | 243 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF722PLP.bed.gz | 1.28 MB | fb63f2da721533ae6e82988ca4331419 |
| ENCFF722PLP.tabix.bed.gz | 704.77 KB | 43a1e43422627aa31201ecb40cc246bc |
| ENCFF722PLP.tabix.bed.gz.tbi | 151.95 KB | 218bd305ef8b095db8789b288c010ecf |
| genomic_resource.yaml | 2.84 KB | a12d6d9624ce4f44012417941f5b00fc |
| statistics/ |