Resource
| Id | Histone_ChIP-seq/ENCSR000AMR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AMR [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (45 years) female child (11 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN227KII|/analyses/ENCAN227KII/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF377BNX|/files/ENCFF377BNX/} processed by ChIP-seq ENCODE3 hg19 pipeline has 7318543 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF066AQB|/files/ENCFF066AQB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 6784781 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AMR | float |
Histone_ChIP-seq_ENCSR000AMR |
Histone_ChIP-seq ENCSR000AMR [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K27ac"]
|
 |
[1.87, 101] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 53379005 | 1.66% | 63144 |
| chr1 | 5076230 | 2.04% | 5899 |
| chr2 | 4275185 | 1.77% | 5140 |
| chr3 | 3284984 | 1.66% | 3935 |
| chr4 | 2105501 | 1.11% | 2691 |
| chr5 | 2954839 | 1.63% | 3475 |
| chr6 | 3073824 | 1.80% | 3631 |
| chr7 | 2518238 | 1.58% | 2973 |
| chr8 | 2383578 | 1.64% | 2954 |
| chr9 | 2311533 | 1.67% | 2724 |
| chr10 | 2608200 | 1.95% | 3071 |
| chr11 | 3004033 | 2.22% | 3346 |
| chr12 | 2852087 | 2.14% | 3274 |
| chr13 | 1262231 | 1.10% | 1531 |
| chr14 | 1629718 | 1.52% | 1933 |
| chr15 | 1945345 | 1.91% | 2228 |
| chr16 | 1935109 | 2.14% | 2263 |
| chr17 | 2723350 | 3.27% | 3067 |
| chr18 | 891007 | 1.11% | 1128 |
| chr19 | 2285899 | 3.90% | 2603 |
| chr20 | 1356551 | 2.11% | 1617 |
| chr21 | 644119 | 1.38% | 774 |
| chr22 | 1105431 | 2.18% | 1290 |
| chrX | 1133437 | 0.73% | 1566 |
| chrY | 18576 | 0.03% | 31 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 63144 | 200 | 20251 | 845.35 | 555 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF943QBE.bed.gz | 1.38 MB | a032af6a0f47925a834cab9624c28a4a |
| ENCFF943QBE.tabix.bed.gz | 664.07 KB | 590b0c3d3f26d267b8e6a684c42633d0 |
| ENCFF943QBE.tabix.bed.gz.tbi | 219.46 KB | 81aab7f1b9def353b966c157a8b5b483 |
| genomic_resource.yaml | 2.6 KB | 2d69da5f692ca1b64b0d875d0f017396 |
| statistics/ |