Resource
| Id | Histone_ChIP-seq/ENCSR000AML |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AML [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (50 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN059CTT|/analyses/ENCAN059CTT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF095KBB|/files/ENCFF095KBB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 7892721 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF037RFR|/files/ENCFF037RFR/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12047668 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AML | float |
Histone_ChIP-seq_ENCSR000AML |
Histone_ChIP-seq ENCSR000AML [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K4me3"]
|
 |
[2.07, 89.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 36520955 | 1.14% | 32298 |
| chr1 | 3616592 | 1.45% | 3144 |
| chr2 | 2539733 | 1.05% | 2260 |
| chr3 | 2167325 | 1.09% | 1884 |
| chr4 | 1627198 | 0.86% | 1362 |
| chr5 | 1787626 | 0.98% | 1487 |
| chr6 | 2255973 | 1.32% | 1881 |
| chr7 | 1728561 | 1.08% | 1572 |
| chr8 | 1420217 | 0.98% | 1197 |
| chr9 | 1498454 | 1.08% | 1372 |
| chr10 | 1581844 | 1.18% | 1384 |
| chr11 | 1936175 | 1.43% | 1678 |
| chr12 | 1983605 | 1.49% | 1695 |
| chr13 | 757593 | 0.66% | 673 |
| chr14 | 1186191 | 1.11% | 1043 |
| chr15 | 1163263 | 1.14% | 1030 |
| chr16 | 1380309 | 1.53% | 1261 |
| chr17 | 1958142 | 2.35% | 1815 |
| chr18 | 682393 | 0.85% | 614 |
| chr19 | 2066219 | 3.52% | 2005 |
| chr20 | 920855 | 1.43% | 826 |
| chr21 | 392694 | 0.84% | 348 |
| chr22 | 773637 | 1.52% | 720 |
| chrX | 1095761 | 0.70% | 1046 |
| chrY | 595 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 32298 | 140 | 10898 | 1130.75 | 743 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF274LUW.bed.gz | 865.63 KB | 0a35c217c7ad1fee21a9d13aba835b47 |
| ENCFF274LUW.tabix.bed.gz | 367.3 KB | 950c8385d43b0ad9a83ca9078c79ebfb |
| ENCFF274LUW.tabix.bed.gz.tbi | 165.79 KB | 7b0a0fa5353e2658635b5fcb7dc083c2 |
| genomic_resource.yaml | 2.48 KB | 888233a851572940643ef9c3d236347b |
| statistics/ |