Resource
| Id | Histone_ChIP-seq/ENCSR000AMG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AMG [biosample_summary="Homo sapiens H1" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN448GJU|/analyses/ENCAN448GJU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF278YYI|/files/ENCFF278YYI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 5651759 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF285FHP|/files/ENCFF285FHP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 11015713 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AMG | float |
Histone_ChIP-seq_ENCSR000AMG |
Histone_ChIP-seq ENCSR000AMG [biosample_summary="Homo sapiens H1" and target="H3K4me3"]
|
 |
[2.4, 48.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 37925448 | 1.18% | 31993 |
| chr1 | 3749093 | 1.51% | 3174 |
| chr2 | 2570786 | 1.06% | 2119 |
| chr3 | 2094311 | 1.06% | 1668 |
| chr4 | 1514558 | 0.80% | 1200 |
| chr5 | 1851340 | 1.02% | 1490 |
| chr6 | 2358808 | 1.38% | 1808 |
| chr7 | 1820819 | 1.14% | 1578 |
| chr8 | 1405499 | 0.97% | 1116 |
| chr9 | 1543101 | 1.11% | 1341 |
| chr10 | 1582776 | 1.18% | 1321 |
| chr11 | 2042829 | 1.51% | 1707 |
| chr12 | 1940169 | 1.46% | 1597 |
| chr13 | 805433 | 0.70% | 644 |
| chr14 | 1260610 | 1.18% | 1004 |
| chr15 | 1236397 | 1.21% | 1075 |
| chr16 | 1468760 | 1.63% | 1301 |
| chr17 | 2169927 | 2.61% | 1906 |
| chr18 | 649697 | 0.81% | 548 |
| chr19 | 2448199 | 4.18% | 2310 |
| chr20 | 1004451 | 1.56% | 910 |
| chr21 | 335344 | 0.72% | 293 |
| chr22 | 759943 | 1.50% | 735 |
| chrX | 1269926 | 0.81% | 1120 |
| chrY | 42672 | 0.07% | 28 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 31993 | 180 | 9557 | 1185.43 | 966 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF118FXI.bed.gz | 869.63 KB | 7f283a55ec616de04266849f5b041b7b |
| ENCFF118FXI.tabix.bed.gz | 367.28 KB | 5ec62ef71ea4f81e00e37938b52448f1 |
| ENCFF118FXI.tabix.bed.gz.tbi | 161.79 KB | 56344079d0771aaa75db8ebbbbea380a |
| genomic_resource.yaml | 2.37 KB | 5964658ab4e353129c587fc6cd3e24c5 |
| statistics/ |