Resource
| Id | Histone_ChIP-seq/ENCSR000ALU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ALU [biosample_summary="Homo sapiens H1" and target="H3K27me3"] |
| Description |
status: archived biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_error: Processed alignments file {ENCFF306KIP|/files/ENCFF306KIP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 4714430 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN328FUJ|/analyses/ENCAN328FUJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF228TCH|/files/ENCFF228TCH/} processed by ChIP-seq ENCODE3 hg19 pipeline has 8737150 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ALU | float |
Histone_ChIP-seq_ENCSR000ALU |
Histone_ChIP-seq ENCSR000ALU [biosample_summary="Homo sapiens H1" and target="H3K27me3"]
|
 |
[2.39, 69.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 33776288 | 1.05% | 31349 |
| chr1 | 3215183 | 1.29% | 3119 |
| chr2 | 2570548 | 1.06% | 2255 |
| chr3 | 1544140 | 0.78% | 1511 |
| chr4 | 1505392 | 0.79% | 1204 |
| chr5 | 1798418 | 0.99% | 1457 |
| chr6 | 1821402 | 1.07% | 1497 |
| chr7 | 1728376 | 1.08% | 1380 |
| chr8 | 1368212 | 0.94% | 1263 |
| chr9 | 1428736 | 1.03% | 1389 |
| chr10 | 1832418 | 1.37% | 1522 |
| chr11 | 2058149 | 1.52% | 2090 |
| chr12 | 1839868 | 1.38% | 1618 |
| chr13 | 734282 | 0.64% | 640 |
| chr14 | 1031417 | 0.96% | 942 |
| chr15 | 1105484 | 1.08% | 959 |
| chr16 | 1073674 | 1.19% | 1071 |
| chr17 | 1951533 | 2.34% | 1726 |
| chr18 | 631115 | 0.79% | 579 |
| chr19 | 1249257 | 2.13% | 1448 |
| chr20 | 1055646 | 1.64% | 1173 |
| chr21 | 312141 | 0.67% | 316 |
| chr22 | 1183243 | 2.33% | 1255 |
| chrX | 714186 | 0.46% | 893 |
| chrY | 23468 | 0.04% | 42 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 31349 | 170 | 103696 | 1077.43 | 526 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF434CYZ.bed.gz | 737.31 KB | 111ed6c9416d5d7f88c5ad41eec6d261 |
| ENCFF434CYZ.tabix.bed.gz | 336.42 KB | 4e6254bafea918700fe7a809dbf53ab1 |
| ENCFF434CYZ.tabix.bed.gz.tbi | 111.52 KB | fe37ea5005a3029086a29fd9dc6a665b |
| genomic_resource.yaml | 2.35 KB | 764fb3e914d65532d4d713b1f94beae8 |
| statistics/ |