Resource
| Id | Histone_ChIP-seq/ENCSR000ALQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ALQ [biosample_summary="Homo sapiens keratinocyte female" and target="H3K9me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female output_type: replicated peaks audit_error: Processed alignments file {ENCFF496NHS|/files/ENCFF496NHS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 4615822 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_error: Processed alignments file {ENCFF473EVC|/files/ENCFF473EVC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 3259589 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN477WAO|/analyses/ENCAN477WAO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF257SFW|/files/ENCFF257SFW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 9631245 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ALQ | float |
Histone_ChIP-seq_ENCSR000ALQ |
Histone_ChIP-seq ENCSR000ALQ [biosample_summary="Homo sapiens keratinocyte female" and target="H3K9me1"]
|
 |
[2.11, 6.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 1460267 | 0.05% | 6724 |
| chr1 | 133439 | 0.05% | 610 |
| chr2 | 115657 | 0.05% | 535 |
| chr3 | 97190 | 0.05% | 445 |
| chr4 | 65945 | 0.03% | 315 |
| chr5 | 77482 | 0.04% | 365 |
| chr6 | 83119 | 0.05% | 381 |
| chr7 | 64322 | 0.04% | 303 |
| chr8 | 74583 | 0.05% | 329 |
| chr9 | 63905 | 0.05% | 301 |
| chr9_KI270718v1_random | 283 | 0.74% | 1 |
| chr10 | 80215 | 0.06% | 364 |
| chr11 | 73959 | 0.05% | 333 |
| chr12 | 74639 | 0.06% | 347 |
| chr13 | 30433 | 0.03% | 140 |
| chr14 | 46293 | 0.04% | 215 |
| chr15 | 53200 | 0.05% | 245 |
| chr16 | 50948 | 0.06% | 232 |
| chr17 | 80842 | 0.10% | 359 |
| chr18 | 30039 | 0.04% | 138 |
| chr19 | 44795 | 0.08% | 210 |
| chr20 | 44153 | 0.07% | 205 |
| chr21 | 16372 | 0.04% | 76 |
| chr22 | 40270 | 0.08% | 181 |
| chrX | 18184 | 0.01% | 94 |
| 3342 contigs with no values (186266446 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 6724 | 165 | 746 | 217.17 | 193 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF032HAA.bed.gz | 104.37 KB | 6da02d58e92a8fad9c3489e523d39b30 |
| ENCFF032HAA.tabix.bed.gz | 60.07 KB | 3e6b0d5eab83ea78750d7a7a715afea7 |
| ENCFF032HAA.tabix.bed.gz.tbi | 59.89 KB | eaaae0713ad3d15031b5e151c1221242 |
| genomic_resource.yaml | 2.84 KB | a29c9e1fc8d5161fe7354366540f04d5 |
| statistics/ |