Resource
| Id | Histone_ChIP-seq/ENCSR000ALM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ALM [biosample_summary="Homo sapiens keratinocyte female" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 3 summary: female output_type: replicated peaks audit_error: Processed alignments file {ENCFF606DFH|/files/ENCFF606DFH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 2360147 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_error: Processed alignments file {ENCFF574AFU|/files/ENCFF574AFU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 4216098 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN258FNP|/analyses/ENCAN258FNP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF740HPY|/files/ENCFF740HPY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 6681032 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ALM | float |
Histone_ChIP-seq_ENCSR000ALM |
Histone_ChIP-seq ENCSR000ALM [biosample_summary="Homo sapiens keratinocyte female" and target="H3K36me3"]
|
 |
[2.06, 9.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 13936819 | 0.43% | 65040 |
| chr1 | 1495883 | 0.60% | 6861 |
| chr2 | 993405 | 0.41% | 4748 |
| chr3 | 884420 | 0.45% | 4119 |
| chr4 | 509902 | 0.27% | 2463 |
| chr5 | 672198 | 0.37% | 3191 |
| chr6 | 638309 | 0.37% | 2969 |
| chr7 | 622078 | 0.39% | 2921 |
| chr8 | 476334 | 0.33% | 2290 |
| chr9 | 604016 | 0.44% | 2800 |
| chr9_KI270718v1_random | 125 | 0.33% | 1 |
| chr10 | 602617 | 0.45% | 2867 |
| chr11 | 764711 | 0.57% | 3555 |
| chr12 | 771494 | 0.58% | 3618 |
| chr13 | 241421 | 0.21% | 1183 |
| chr14 | 461905 | 0.43% | 2179 |
| chr15 | 450590 | 0.44% | 2177 |
| chr16 | 666802 | 0.74% | 3044 |
| chr17 | 884393 | 1.06% | 4026 |
| chr17_GL000205v2_random | 162 | 0.09% | 1 |
| chr18 | 253479 | 0.32% | 1239 |
| chr19 | 715962 | 1.22% | 3238 |
| chr20 | 489380 | 0.76% | 2209 |
| chr21 | 195607 | 0.42% | 873 |
| chr22 | 425782 | 0.84% | 1885 |
| chrX | 115844 | 0.07% | 583 |
| 3341 contigs with no values (186080855 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 65040 | 125 | 1456 | 214.28 | 183 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF966SIF.bed.gz | 1.0 MB | a4411019c112e9cd22ae9ad975fd59a8 |
| ENCFF966SIF.tabix.bed.gz | 576.36 KB | 147c51ca986b3d0d1ef7d86573d1da66 |
| ENCFF966SIF.tabix.bed.gz.tbi | 164.34 KB | 89a8757f522dec918c8f4ba37a366636 |
| genomic_resource.yaml | 2.84 KB | 3d2ff1ff037b56d309ee48c07289b462 |
| statistics/ |