Resource
| Id | Histone_ChIP-seq/ENCSR000ALL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ALL [biosample_summary="Homo sapiens keratinocyte female" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female output_type: replicated peaks audit_error: Processed alignments file {ENCFF197IFZ|/files/ENCFF197IFZ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 2850530 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_error: Processed alignments file {ENCFF873WML|/files/ENCFF873WML/} processed by ChIP-seq ENCODE3 hg19 pipeline has 3836031 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN310PLQ|/analyses/ENCAN310PLQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF285QUM|/files/ENCFF285QUM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 6577235 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ALL | float |
Histone_ChIP-seq_ENCSR000ALL |
Histone_ChIP-seq ENCSR000ALL [biosample_summary="Homo sapiens keratinocyte female" and target="H3K27me3"]
|
 |
[2.08, 26.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 22048305 | 0.69% | 41930 |
| chr1 | 2025415 | 0.81% | 3934 |
| chr2 | 1747024 | 0.72% | 3297 |
| chr3 | 1104479 | 0.56% | 2180 |
| chr4 | 909284 | 0.48% | 1513 |
| chr5 | 1014271 | 0.56% | 1894 |
| chr6 | 1083059 | 0.63% | 2047 |
| chr7 | 1130376 | 0.71% | 2156 |
| chr8 | 815125 | 0.56% | 1532 |
| chr9 | 1074751 | 0.78% | 2090 |
| chr10 | 1088908 | 0.81% | 1998 |
| chr11 | 1313026 | 0.97% | 2469 |
| chr12 | 876816 | 0.66% | 1681 |
| chr13 | 556673 | 0.49% | 998 |
| chr14 | 719482 | 0.67% | 1302 |
| chr15 | 901834 | 0.88% | 1744 |
| chr16 | 692314 | 0.77% | 1342 |
| chr17 | 1489576 | 1.79% | 2744 |
| chr18 | 364134 | 0.45% | 677 |
| chr19 | 795947 | 1.36% | 1380 |
| chr20 | 1165714 | 1.81% | 2319 |
| chr21 | 295912 | 0.63% | 593 |
| chr22 | 470446 | 0.93% | 1008 |
| chrX | 413739 | 0.27% | 1032 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 41930 | 195 | 14169 | 525.84 | 322 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF151HKM.bed.gz | 736.59 KB | 925d3e78ba9c484f5c4b863186b35d37 |
| ENCFF151HKM.tabix.bed.gz | 393.65 KB | d5369339d7379749e4a3e94bcfc387fc |
| ENCFF151HKM.tabix.bed.gz.tbi | 137.22 KB | 3b0758d12c47e1aaf420b46ce4d38e28 |
| genomic_resource.yaml | 2.84 KB | 75280170fb3ddc61a8dbf825f61d55eb |
| statistics/ |