Resource
| Id | Histone_ChIP-seq/ENCSR000ALI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ALI [biosample_summary="Homo sapiens keratinocyte female" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 3 summary: female output_type: replicated peaks audit_error: Processed alignments file {ENCFF239VSG|/files/ENCFF239VSG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 3873114 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_error: Processed alignments file {ENCFF619NZW|/files/ENCFF619NZW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 4754489 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN032OJN|/analyses/ENCAN032OJN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF784QIY|/files/ENCFF784QIY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 9517301 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ALI | float |
Histone_ChIP-seq_ENCSR000ALI |
Histone_ChIP-seq ENCSR000ALI [biosample_summary="Homo sapiens keratinocyte female" and target="H3K4me1"]
|
 |
[2.03, 23.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 59824759 | 1.86% | 117065 |
| chr1 | 6402811 | 2.57% | 12072 |
| chr2 | 5200676 | 2.15% | 10001 |
| chr3 | 4161729 | 2.10% | 8025 |
| chr4 | 2823513 | 1.48% | 5746 |
| chr5 | 3265180 | 1.80% | 6390 |
| chr6 | 3751410 | 2.20% | 7350 |
| chr7 | 2701924 | 1.70% | 5407 |
| chr8 | 2694464 | 1.86% | 5336 |
| chr9 | 2680853 | 1.94% | 5106 |
| chr10 | 2948070 | 2.20% | 5749 |
| chr11 | 3195582 | 2.37% | 6092 |
| chr12 | 3124511 | 2.34% | 6119 |
| chr13 | 1387699 | 1.21% | 2819 |
| chr14 | 1955460 | 1.83% | 3780 |
| chr15 | 2183058 | 2.14% | 4125 |
| chr16 | 1769020 | 1.96% | 3572 |
| chr17 | 2585761 | 3.11% | 4980 |
| chr17_GL000205v2_random | 682 | 0.37% | 2 |
| chr18 | 1377826 | 1.71% | 2707 |
| chr19 | 1300722 | 2.22% | 2886 |
| chr20 | 1634627 | 2.54% | 3176 |
| chr21 | 752682 | 1.61% | 1473 |
| chr22 | 1208058 | 2.38% | 2306 |
| chrUn_GL000195v1 | 2197 | 1.20% | 2 |
| chrX | 716244 | 0.46% | 1844 |
| 3341 contigs with no values (185936013 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 117065 | 165 | 6226 | 511.04 | 396 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF575PPG.bed.gz | 2.12 MB | 20dd98284373f4569b98440a2fcb6c69 |
| ENCFF575PPG.tabix.bed.gz | 1.11 MB | 127ba8611b0b2c6afd22a327419082df |
| ENCFF575PPG.tabix.bed.gz.tbi | 331.24 KB | 70b922bbe4e1500b31071936cfb51f71 |
| genomic_resource.yaml | 2.84 KB | 31fe2f8f1260cf8faab822abb91a1ac1 |
| statistics/ |