Resource
| Id | Histone_ChIP-seq/ENCSR000ALF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ALF [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: newborn output_type: replicated peaks audit_internal_action: Released analysis {ENCAN308CSM|/analyses/ENCAN308CSM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF048JCA|/files/ENCFF048JCA/} processed by ChIP-seq ENCODE3 hg19 pipeline has 8717016 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF557NBO|/files/ENCFF557NBO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 7175671 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ALF | float |
Histone_ChIP-seq_ENCSR000ALF |
Histone_ChIP-seq ENCSR000ALF [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H4K20me1"]
|
 |
[1.52, 10.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6726678 | 0.21% | 18232 |
| chr1 | 661657 | 0.27% | 1745 |
| chr2 | 611862 | 0.25% | 1614 |
| chr3 | 576640 | 0.29% | 1546 |
| chr4 | 289558 | 0.15% | 806 |
| chr5 | 483188 | 0.27% | 1286 |
| chr6 | 444429 | 0.26% | 1171 |
| chr7 | 363178 | 0.23% | 1003 |
| chr8 | 306089 | 0.21% | 825 |
| chr9 | 193595 | 0.14% | 549 |
| chr10 | 341002 | 0.25% | 942 |
| chr11 | 278661 | 0.21% | 779 |
| chr12 | 374784 | 0.28% | 1047 |
| chr13 | 147079 | 0.13% | 434 |
| chr14 | 236075 | 0.22% | 641 |
| chr15 | 257572 | 0.25% | 745 |
| chr16 | 184851 | 0.20% | 498 |
| chr17 | 290922 | 0.35% | 762 |
| chr18 | 175841 | 0.22% | 449 |
| chr19 | 86392 | 0.15% | 224 |
| chr20 | 186170 | 0.29% | 484 |
| chr21 | 93673 | 0.20% | 247 |
| chr22 | 116613 | 0.23% | 340 |
| chrX | 24655 | 0.02% | 87 |
| chrY | 2192 | <0.01% | 8 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 18232 | 190 | 2466 | 368.95 | 316 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF346SGF.bed.gz | 333.03 KB | cfb404c3756a9166e2fdba9683aaede4 |
| ENCFF346SGF.tabix.bed.gz | 177.29 KB | 69750445bb1bb871ea02f3a2980b0a58 |
| ENCFF346SGF.tabix.bed.gz.tbi | 69.61 KB | f60a815e305b1770f15a289e9a62d9d4 |
| genomic_resource.yaml | 2.61 KB | d379d495fa1b7b377b3c04281dfd73ee |
| statistics/ |