Resource

Id Histone_ChIP-seq/ENCSR000ALEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000ALE [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K9me1"]
Description
Labels
  • accession: ENCSR000ALE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002618/
  • biosample_summary: Homo sapiens endothelial cell of umbilical vein newborn
  • date_created: 2013-11-07T22:15:55.969353+00:00
  • date_released: 2011-02-10
  • doi: 10.17989/ENCSR000ALE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary: newborn
  • status: released
  • submitter_comment: As of August 2022, the donors associated with the biosamples in this dataset were changed from ENCDO551FXN to ENCDO466MPW and ENCDO560UMK. See PMID:32728101.
  • target: H3K9me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000ALE float

Histone_ChIP-seq_ENCSR000ALE
Histone_ChIP-seq ENCSR000ALE [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K9me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR000ALE [2.15, 8.27]
n
1,179,369
mean
3.89
sd
0.671

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 11793690.04% 4275
chr1 99889 0.04% 354
chr2 107101 0.04% 386
chr3 89212 0.04% 320
chr4 86182 0.05% 313
chr5 75767 0.04% 277
chr6 81382 0.05% 294
chr7 65121 0.04% 235
chr8 64076 0.04% 234
chr9 46896 0.03% 165
chr10 54184 0.04% 196
chr11 52555 0.04% 194
chr12 65122 0.05% 242
chr13 54923 0.05% 208
chr14 44310 0.04% 161
chr15 41846 0.04% 147
chr16 17770 0.02% 66
chr17 28349 0.03% 102
chr18 35332 0.04% 127
chr19 8798 0.02% 33
chr20 22128 0.03% 81
chr21 15332 0.03% 55
chr22 13717 0.03% 46
chrX 8458 0.01% 36
chrY 919 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 4275 175 874 275.88 257
global segment-length histogram

Files

Filename Size md5
ENCFF736BEU.bed.gz 72.63 KB 9fc21565b23e202e0560c79756199801
ENCFF736BEU.tabix.bed.gz 40.03 KB 901696bccf25fb64bdc25a698431c36d
ENCFF736BEU.tabix.bed.gz.tbi 44.12 KB f02fa9ed0acb3804fbb3b604e102f0d1
genomic_resource.yaml 2.61 KB cc54d7c565bfd74dd655fa083bd26625
statistics/