Resource
| Id | Histone_ChIP-seq/ENCSR000ALD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ALD [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 3 summary: newborn output_type: replicated peaks audit_error: Processed alignments file {ENCFF710BRH|/files/ENCFF710BRH/} processed by ChIP-seq ENCODE3 hg19 pipeline has 4563868 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Released analysis {ENCAN710VNT|/analyses/ENCAN710VNT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF555AYI|/files/ENCFF555AYI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 6293822 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ALD | float |
Histone_ChIP-seq_ENCSR000ALD |
Histone_ChIP-seq ENCSR000ALD [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K9ac"]
|
 |
[1.93, 127] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 41958251 | 1.30% | 45378 |
| chr1 | 4004886 | 1.61% | 4264 |
| chr2 | 3065786 | 1.27% | 3339 |
| chr3 | 2815263 | 1.42% | 2965 |
| chr4 | 1913822 | 1.01% | 2061 |
| chr5 | 2174874 | 1.20% | 2294 |
| chr6 | 2671825 | 1.56% | 2704 |
| chr7 | 2048262 | 1.29% | 2221 |
| chr8 | 1725346 | 1.19% | 1894 |
| chr9 | 1746199 | 1.26% | 1882 |
| chr10 | 1914455 | 1.43% | 2041 |
| chr11 | 2087233 | 1.55% | 2269 |
| chr12 | 2361937 | 1.77% | 2475 |
| chr13 | 1085128 | 0.95% | 1159 |
| chr14 | 1356558 | 1.27% | 1476 |
| chr15 | 1431563 | 1.40% | 1542 |
| chr16 | 1371128 | 1.52% | 1524 |
| chr17 | 1951040 | 2.34% | 2209 |
| chr18 | 860959 | 1.07% | 934 |
| chr19 | 1673603 | 2.86% | 1919 |
| chr20 | 1038162 | 1.61% | 1137 |
| chr21 | 521236 | 1.12% | 572 |
| chr22 | 830345 | 1.63% | 931 |
| chrX | 1249650 | 0.80% | 1501 |
| chrY | 58991 | 0.10% | 65 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 45378 | 190 | 14913 | 924.64 | 657 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF074CZH.bed.gz | 1.1 MB | ac9920192b0ff0a790198a1a7705f356 |
| ENCFF074CZH.tabix.bed.gz | 497.79 KB | 2e500e37c14efd18660a682551bf8aac |
| ENCFF074CZH.tabix.bed.gz.tbi | 196.25 KB | a516ad758fa4c6f316101d6cc68160bc |
| genomic_resource.yaml | 2.59 KB | 39ba9ed23dd1f3a5c866c6621d891ee2 |
| statistics/ |