Resource
| Id | Histone_ChIP-seq/ENCSR000AKX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AKX [biosample_summary="Homo sapiens K562" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN284DDX|/analyses/ENCAN284DDX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN284DDX|/analyses/ENCAN284DDX/} has in progress subobject document {2b18d586-0b76-4489-bca1-1d3070bc67b3|/documents/2b18d586-0b76-4489-bca1-1d3070bc67b3/} audit_not_compliant: Processed alignments file {ENCFF255QRL|/files/ENCFF255QRL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 8887200 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF923YUN|/files/ENCFF923YUN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13466406 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AKX | float |
Histone_ChIP-seq_ENCSR000AKX |
Histone_ChIP-seq ENCSR000AKX [biosample_summary="Homo sapiens K562" and target="H4K20me1"]
|
 |
[1.58, 16.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 24959772 | 0.78% | 38328 |
| chr1 | 3418847 | 1.37% | 5264 |
| chr2 | 1256185 | 0.52% | 2061 |
| chr3 | 1127744 | 0.57% | 1760 |
| chr4 | 627202 | 0.33% | 1001 |
| chr5 | 1104420 | 0.61% | 1748 |
| chr6 | 1309982 | 0.77% | 2034 |
| chr7 | 1560899 | 0.98% | 2501 |
| chr8 | 954763 | 0.66% | 1491 |
| chr9 | 1210670 | 0.87% | 1819 |
| chr10 | 983465 | 0.74% | 1580 |
| chr11 | 1325343 | 0.98% | 2174 |
| chr12 | 954787 | 0.72% | 1490 |
| chr13 | 219683 | 0.19% | 334 |
| chr14 | 314137 | 0.29% | 532 |
| chr15 | 779075 | 0.76% | 1352 |
| chr16 | 1662871 | 1.84% | 2371 |
| chr17 | 1426174 | 1.71% | 2280 |
| chr18 | 205623 | 0.26% | 353 |
| chr19 | 1529561 | 2.61% | 2017 |
| chr20 | 930501 | 1.44% | 1515 |
| chr21 | 410988 | 0.88% | 665 |
| chr22 | 1325527 | 2.61% | 1504 |
| chrX | 321325 | 0.21% | 482 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 38328 | 203 | 16875 | 651.22 | 500 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF909RKY.bed.gz | 802.69 KB | fe4c93b6faa0ab4153ef41fe516bced4 |
| ENCFF909RKY.tabix.bed.gz | 388.85 KB | 87b1d547d02fe28cc66eb1cf60b201f5 |
| ENCFF909RKY.tabix.bed.gz.tbi | 138.14 KB | 9d3b2d5b7f1c2df9f5f7e4adb2a0aff7 |
| genomic_resource.yaml | 2.6 KB | 93c1276ea050ab2c63b22f2a51a281bd |
| statistics/ |