Resource
| Id | Histone_ChIP-seq/ENCSR000AKN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AKN [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: newborn output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN684TUZ|/analyses/ENCAN684TUZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF456FFM|/files/ENCFF456FFM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 7049506 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF353JMR|/files/ENCFF353JMR/} processed by ChIP-seq ENCODE3 hg19 pipeline has 6891298 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AKN | float |
Histone_ChIP-seq_ENCSR000AKN |
Histone_ChIP-seq ENCSR000AKN [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K4me3"]
|
 |
[1.59, 108] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 32920197 | 1.02% | 33808 |
| chr1 | 3236487 | 1.30% | 3253 |
| chr2 | 2331612 | 0.96% | 2322 |
| chr3 | 2037712 | 1.03% | 1978 |
| chr4 | 1537306 | 0.81% | 1481 |
| chr5 | 1680118 | 0.93% | 1649 |
| chr6 | 2110987 | 1.24% | 2080 |
| chr7 | 1652280 | 1.04% | 1711 |
| chr8 | 1290274 | 0.89% | 1344 |
| chr9 | 1361905 | 0.98% | 1439 |
| chr10 | 1446097 | 1.08% | 1493 |
| chr11 | 1646468 | 1.22% | 1672 |
| chr12 | 1811665 | 1.36% | 1802 |
| chr13 | 772353 | 0.68% | 810 |
| chr14 | 1083268 | 1.01% | 1103 |
| chr15 | 1108813 | 1.09% | 1136 |
| chr16 | 1136135 | 1.26% | 1245 |
| chr17 | 1648566 | 1.98% | 1794 |
| chr18 | 625358 | 0.78% | 654 |
| chr19 | 1642986 | 2.80% | 1864 |
| chr20 | 771430 | 1.20% | 808 |
| chr21 | 356118 | 0.76% | 388 |
| chr22 | 638787 | 1.26% | 699 |
| chrX | 953216 | 0.61% | 1054 |
| chrY | 40256 | 0.07% | 29 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 33808 | 185 | 10433 | 973.74 | 659 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF681KRK.bed.gz | 866.34 KB | 270c2fcee45246ec339c2945ccde6ccd |
| ENCFF681KRK.tabix.bed.gz | 376.17 KB | e0cc9402b9ff9055c47f27e214277869 |
| ENCFF681KRK.tabix.bed.gz.tbi | 168.14 KB | ab00e8b7802e5fc61245d984d11a623e |
| genomic_resource.yaml | 2.6 KB | 22e52a61e8cb62a75f59da34b7f2f80b |
| statistics/ |