Resource
| Id | Histone_ChIP-seq/ENCSR000AKL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AKL [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: newborn output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN528LUL|/analyses/ENCAN528LUL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF399DFC|/files/ENCFF399DFC/} processed by ChIP-seq ENCODE3 hg19 pipeline has 10104348 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF402IJP|/files/ENCFF402IJP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 7774737 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AKL | float |
Histone_ChIP-seq_ENCSR000AKL |
Histone_ChIP-seq ENCSR000AKL [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K4me1"]
|
 |
[1.68, 27.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 92573049 | 2.88% | 108266 |
| chr1 | 8656266 | 3.48% | 9938 |
| chr2 | 7652128 | 3.16% | 8667 |
| chr3 | 6776304 | 3.42% | 7472 |
| chr4 | 4853856 | 2.55% | 5563 |
| chr5 | 5347014 | 2.95% | 6085 |
| chr6 | 5845574 | 3.42% | 6808 |
| chr7 | 4586137 | 2.88% | 5477 |
| chr8 | 4328066 | 2.98% | 4969 |
| chr9 | 3900202 | 2.82% | 4542 |
| chr10 | 4550848 | 3.40% | 5166 |
| chr11 | 4522893 | 3.35% | 5286 |
| chr12 | 5184362 | 3.89% | 5885 |
| chr13 | 2742551 | 2.40% | 3129 |
| chr14 | 3003039 | 2.81% | 3495 |
| chr15 | 3254542 | 3.19% | 3648 |
| chr16 | 2507224 | 2.78% | 3125 |
| chr17 | 3612253 | 4.34% | 4543 |
| chr18 | 2102017 | 2.62% | 2397 |
| chr19 | 1966330 | 3.35% | 2905 |
| chr20 | 2346864 | 3.64% | 2669 |
| chr21 | 1140522 | 2.44% | 1316 |
| chr22 | 1583373 | 3.12% | 1876 |
| chrX | 2032536 | 1.30% | 3154 |
| chrY | 78148 | 0.14% | 151 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 108266 | 195 | 18539 | 855.05 | 625 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF425FRS.bed.gz | 2.38 MB | 5b2e414333328546a09e18a6dd71caeb |
| ENCFF425FRS.tabix.bed.gz | 1.1 MB | b7459027efd7656aa7ef78079eb16af3 |
| ENCFF425FRS.tabix.bed.gz.tbi | 314.14 KB | 5383ed3579416ac10ecaf1313a837683 |
| genomic_resource.yaml | 2.6 KB | d021ae28cc9b931d8f16c563e4c15073 |
| statistics/ |