Resource
| Id | Histone_ChIP-seq/ENCSR000AKI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AKI [biosample_summary="Homo sapiens GM12878" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN953YCI|/analyses/ENCAN953YCI/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF968HWY|/files/ENCFF968HWY/} processed by ChIP-seq ENCODE3 hg19 pipeline has 6712817 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF015YIT|/files/ENCFF015YIT/} processed by ChIP-seq ENCODE3 hg19 pipeline has 7186085 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AKI | float |
Histone_ChIP-seq_ENCSR000AKI |
Histone_ChIP-seq ENCSR000AKI [biosample_summary="Homo sapiens GM12878" and target="H4K20me1"]
|
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[1.86, 9.04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 2772568 | 0.09% | 7943 |
| chr1 | 267065 | 0.11% | 753 |
| chr2 | 170393 | 0.07% | 520 |
| chr3 | 129798 | 0.07% | 392 |
| chr4 | 77788 | 0.04% | 233 |
| chr5 | 126209 | 0.07% | 357 |
| chr6 | 121419 | 0.07% | 369 |
| chr7 | 106086 | 0.07% | 318 |
| chr8 | 111803 | 0.08% | 332 |
| chr9 | 130909 | 0.09% | 381 |
| chr10 | 109073 | 0.08% | 347 |
| chr11 | 137059 | 0.10% | 401 |
| chr12 | 102375 | 0.08% | 306 |
| chr13 | 44264 | 0.04% | 135 |
| chr14 | 73676 | 0.07% | 219 |
| chr15 | 105261 | 0.10% | 284 |
| chr16 | 217782 | 0.24% | 578 |
| chr17 | 169645 | 0.20% | 478 |
| chr18 | 25180 | 0.03% | 80 |
| chr19 | 249030 | 0.42% | 611 |
| chr20 | 125235 | 0.19% | 359 |
| chr21 | 26842 | 0.06% | 73 |
| chr22 | 109801 | 0.22% | 312 |
| chrX | 35875 | 0.02% | 105 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 7943 | 190 | 2471 | 349.06 | 298 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF308WNH.bed.gz | 139.34 KB | bc0959ea668b50865d6632297a85271a |
| ENCFF308WNH.tabix.bed.gz | 77.3 KB | 2ce6c35cbe0a81b4d34d8d7e21c8d447 |
| ENCFF308WNH.tabix.bed.gz.tbi | 49.3 KB | ea8747dffd11534d0937b4ece0dfc975 |
| genomic_resource.yaml | 2.51 KB | 04760e359a95e4570f9dd0f63dfa6420 |
| statistics/ |
