Resource

Id DNase-seq/ENCSR999VDHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR999VDH [biosample_summary="Homo sapiens pancreas tissue female adult (59 years)"]
Description
Labels
  • accession: ENCSR999VDH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001264/
  • biosample_summary: Homo sapiens pancreas tissue female adult (59 years)
  • date_created: 2019-11-01T19:05:04.070424+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR999VDH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (59 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR999VDH float

DNase-seq_ENCSR999VDH

DNase-seq ENCSR999VDH [biosample_summary="Homo sapiens pancreas tissue female adult (59 years)"]
HISTOGRAM FOR DNase-seq_ENCSR999VDH [0.0542, 82.1]
n
21,615,874
mean
3.12
sd
5.36

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 216158740.67% 111046
chr1 1991060 0.80% 10202
chr2 1376671 0.57% 7316
chr3 1004998 0.51% 5377
chr4 825387 0.43% 4331
chr5 804893 0.44% 4216
chr6 811306 0.47% 4422
chr7 1095515 0.69% 5602
chr8 986159 0.68% 5027
chr9 1177696 0.85% 5832
chr10 901951 0.67% 4766
chr11 1441189 1.07% 7201
chr12 878963 0.66% 4579
chr13 377028 0.33% 2006
chr14 742559 0.69% 3770
chr15 570002 0.56% 3055
chr16 1148328 1.27% 5736
chr17 1427973 1.72% 7112
chr18 284950 0.35% 1566
chr19 1496738 2.55% 7326
chr20 704744 1.09% 3604
chr21 326429 0.70% 1674
chr22 784707 1.54% 3874
chrX 456397 0.29% 2450
chrY 231 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 111046 1 1160 194.66 180
global segment-length histogram

Files

Filename Size md5
ENCFF539QAF.bed.gz 1.18 MB 50f3eaa10942b031e50e0c330a44b4ab
ENCFF539QAF.tabix.bed.gz 1.09 MB e0f6070ca5113ca7b9ea300c994234ff
ENCFF539QAF.tabix.bed.gz.tbi 324.92 KB 1324210c0f1ac30be413e2c38fcbc026
genomic_resource.yaml 1.21 KB 99fa1948ad0e25880ffe16a619f6bf41
statistics/