Resource

Id DNase-seq/ENCSR998IXQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR998IXQ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour"]
Description
Labels
  • accession: ENCSR998IXQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour
  • date_created: 2020-04-19T18:36:52.489827+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR998IXQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR998IXQ float

DNase-seq_ENCSR998IXQ
DNase-seq ENCSR998IXQ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR998IXQ [0.302, 69.4]
n
7,421,627
mean
8.74
sd
9.23

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 74216270.23% 39796
chr1 752974 0.30% 4035
chr2 503935 0.21% 2712
chr3 401193 0.20% 2123
chr4 255753 0.13% 1337
chr5 322546 0.18% 1747
chr6 427030 0.25% 2279
chr7 331164 0.21% 1797
chr8 265820 0.18% 1438
chr9 310372 0.22% 1671
chr10 332306 0.25% 1772
chr11 376048 0.28% 2027
chr12 382950 0.29% 2053
chr13 145893 0.13% 758
chr14 264148 0.25% 1394
chr15 242355 0.24% 1318
chr16 313715 0.35% 1688
chr17 456521 0.55% 2444
chr18 112201 0.14% 601
chr19 527107 0.90% 2780
chr20 209386 0.32% 1158
chr21 87356 0.19% 487
chr22 186184 0.37% 1020
chrX 208102 0.13% 1124
chrY 6568 0.01% 33
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39796 2 860 186.49 180
global segment-length histogram

Files

Filename Size md5
ENCFF543RBB.bed.gz 442.04 KB c6a8123bf8a3107c9192dcbeb0b977ac
ENCFF543RBB.tabix.bed.gz 400.76 KB 18eaaab2db1b9c47eb487167f8842fa3
ENCFF543RBB.tabix.bed.gz.tbi 199.77 KB 47c2c3c0cbe3f5bc9d05c367a8dbdb6c
genomic_resource.yaml 2.42 KB 6bc79ce21d7f046c66b59f42d34fb5fe
statistics/